PP_0070RF6.1

USA/PP_0070RF6.1/2026-04-01
J. Garfin, M. Plumb, K. Pung, A. Mondelli, B. Weber, H. D. Kunerth, D. Evans, L. Bohnker-Voels, M. Anacker, J. Jencks & S. Namugenyi

Minnesota Department of Health Infectious Disease Laboratory Submission Group, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-04-01
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-04579

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-27 12:02insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.11

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-05-26
NCBI update date
2026-05-26
Raw reads accession

Host

Host

Submission details

Submission ID
PZ414236.1
Submitting group
Date submitted
2026-05-27 12:02:24 UTC
Date released
2026-05-27 12:02:44 UTC
Earliest release date
2026-05-26

Alignment and QC

Length
15054 (92.7%)
# of SNPs
222
# of inserted bases
7
# of unknown bases
931

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G192A
  • T543A
  • G587T
  • C589T
  • G1034A
  • G1050A
  • G1077A
  • T1359C
  • A1361G
  • T1413A
  • T1422C
  • C1566T
  • C1788T
  • C1806T
  • T2165C
  • A2262T
Deletions
N/A
Insertions

ins_3154:A, ins_3217:ATG, ins_4592:A, ins_15115:TT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:A23T
  • F:K123R

G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:S144G
  • G:N178G
  • G:K213Q
  • G:G224E
  • G:S243I
  • G:T245A
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P276L
  • G:D284G
  • G:P298L

L

  • L:N37D
  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:K1589N
  • L:S1593G
  • L:N1723S
  • L:G1731D
  • L:H1798Y
  • L:K2064R
  • L:T2069A

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:D62G
  • M2-2:T77A

N

  • N:K84R
  • N:V352A

P

  • P:L55P
  • P:T92M

SH

  • SH:T25I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue