PP_0070LDF.1

USA/PP_0070LDF.1/2026-05-10
R. Sainsbury

Utah Public Health Laboratory Infectious Disease submission group, Utah Public Health Laboratory

Sample details

Collection date
2026-05-10
Sampling location
USA (Arizona)
Isolate name
MVs/Arizona.USA/19.26/UT-UPHL-260515262939 [D8]

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-27 04:00insdc_ingest_userOPEN
Data use terms URL

Genotype

Genotype
D8

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-05-26
NCBI update date
2026-05-26
Raw reads accession

Host

Host

Submission details

Submission ID
PZ440296.1
Submitting group
Date submitted
2026-05-27 04:00:32 UTC
Date released
2026-05-27 04:02:18 UTC
Earliest release date
2026-05-26

Alignment and QC

Length
15471 (69.5%)
# of SNPs
348
# of unknown bases
4421

Nucleotide mutations

Mutations called relative to the NC_001498.1 reference

Substitutions

  • A413G
  • T422C
  • T449C
  • C518T
  • C538T
  • T572C
  • C596T
  • G626A
  • C629T
  • A747C
  • T791C
  • G809C
  • T860C
  • T881C
  • C1043T
  • A1055G
  • G1076A
  • C1101T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001498.1 reference

Substitutions

C

  • C:D5G
  • C:K78R
  • C:G181V

F

  • F:S276A
  • F:H419R

H

  • H:R175K
  • H:G235E
  • H:G243E
  • H:A267I
  • H:R334Q
  • H:N390I
  • H:A400T
  • H:V412L
  • H:N416D
  • H:T446S
  • H:V451M
  • H:K575Q
  • H:V608A

L

  • L:R142K
  • L:H157Y
  • L:A252T
  • L:P275S
  • L:F321C
  • L:E329D
  • L:L610S
  • L:Y613H
  • L:D1037G
  • L:V1343I
  • L:S1356P
  • L:A1653S
  • L:I1663V
  • L:V1705I
  • L:I1710F
  • L:S1711P
  • L:S1745N
  • L:V2096I

N

  • N:S144F
  • N:K214Q
  • N:I406T
  • N:K441R
  • N:G443S
  • N:E446G
  • N:Y451N
  • N:S457I
  • N:A459L
  • N:P467L
  • N:M471T

P

  • P:E54K
  • P:D87N
  • P:T92A
  • P:K195R
  • P:S219G
  • P:A269V
  • P:G270E
  • P:I282T
  • P:T291I
  • P:K350R
  • P:A459V

V

  • V:E54K
  • V:D87N
  • V:T92A
  • V:K195R
  • V:S219G
  • V:G237S
Deletions
N/A
Insertions
N/A

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