PP_00702S6.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Spain/PP_00702S6.1/2026-05-11
A. Negredo, A. Vázquez, A. Potente, I. Cuesta, S. Varona, J. Ledesma, V. López, P. Jiménez & M. P. SánchezSeco

Sample details

Collection date
2026-05-11
Sampling location
Spain

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-05-24 21:51pazsanchezsecoRESTRICTED until 2027-05-24
Data use terms URL

Submission details

Submission ID
110526SP
Submitting group
Date submitted
2026-05-24 21:51:58 UTC
Date released
2026-05-24 22:04:25 UTC
Earliest release date
2026-05-24

Alignment and QC

Length L
1290 (24.6%)
# of SNPs L
84
# of deleted bases L
339
# of unknown bases L
17
Length S
1790 (88.5%)
# of SNPs S
120
# of inserted bases S
19
# of deleted bases S
2
# of unknown bases S
118
# of frame shifts S
1
Frame shifts S
N:98-429(nt:334-1329)
Length M
2945 (98.8%)
# of SNPs M
167
# of deleted bases M
683
# of frame shifts M
3
Frame shifts M
GPC:36-120(nt:157-411),GPC:634-783(nt:1949-2399),GPC:1101-1139(nt:3351-3468)

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • A233C
  • T278C
  • A296G
  • T297C
  • A302G
  • T326C
  • T329C
  • T332C
  • T344C
  • C347T
  • T359C
  • A374G
  • G386A
  • G404A
  • C431T
  • G452T
  • C457T
  • T458C

M

  • G45A
  • T74C
  • T90C
  • G114A
  • C174T
  • C190T
  • A192G
  • C231T
  • C243T
  • A264G
  • T312C
  • C315T
  • G339C
  • T345C
  • A360G
  • T363C
  • A381G
  • T387C

S

  • G63A
  • G66A
  • G120A
  • A135G
  • T202C
  • A219G
  • T225C
  • T244C
  • C417T
  • C444A
  • G450A
  • T454C
  • C459T
  • G465A
  • A483G
  • G504A
  • A543G
  • T549C
Deletions

L

650-787, 1320-1520

M

126-156, 412-518, 1083-1448, 1552-1677, 1938-1948, 2400-2436, 3346-3350

S

1443, 1573
Insertions

S

ins_333:NNNNNNNN, ins_1257:NNNNN, ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:H294Y
  • GPC:T1023A
  • GPC:S1055T

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S

RdRp

  • RdRp:T141I
  • RdRp:L277S
  • RdRp:S338A
  • RdRp:R346K
  • RdRp:I402V
  • RdRp:A541V
Deletions

GPC

GPC:26-35, GPC:121-156, GPC:345-466, GPC:501-542, GPC:630-633, GPC:784-795, GPC:1099, GPC:1100

RdRp

RdRp:206-251, RdRp:429-495
Insertions

N

ins_N:429:XXXX

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