PP_00701KM.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Chile/PP_00701KM.1/2013-04-30

Lissette Ulloa-Zepeda, Catalina Pavez & Cecilia Vial

Programa Hantavirus y Zoonosis, Universidad del Desarrollo Clínica Alemana

Sample details

Collection date

2013-04-30

Sampling location

Chile (Puerto Octay, Los Lagos)

Data use terms

Changed	User	Data use terms
2026-05-23 01:47	lulloaz	RESTRICTED until 2027-05-22

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Host

mice and others (Oligoryzomys longicaudatus)

Sequencing

Sequencing instrument

MinION Mk1D

Submission details

Submission ID

R131

Submitting group

Programa Hantavirus y Zoonosis

Date submitted

2026-05-23 01:47:46 UTC

Date released

2026-05-23 01:48:43 UTC

Earliest release date

2026-05-23

Alignment and QC

Length L

6482 (98.8%)

# of SNPs L

396

Length M

3604 (98.2%)

# of SNPs M

198

Length S

1799 (95.9%)

# of SNPs S

112

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
C74T
C131T
C146T
G149A
C155T
C173T
A200G
A212G
A218G
A296G
T297C
A302G
A320G
T326C
T329C
T344C
C347T

M

T74C
C111T
G114A
C147T
C159T
C174T
C190T
A192G
C231T
A264G
G339A
C342T
T345C
A360G
T387C
C394T
G420A
C441T

S

G63A
G66A
G120A
A135G
A219G
T225C
T244C
T306C
A312G
G315A
A318G
T363C
C417T
C444A
T454C
C459T
G477A
A483G

Deletions

S

1443, 1573

Insertions

S

ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references