PP_00701D0.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Chile/PP_00701D0.1/2013-04-05
Lissette Ulloa-Zepeda, Catalina Pavez & Cecilia Vial

Programa Hantavirus y Zoonosis, Universidad del Desarrollo Clínica Alemana

Sample details

Collection date
2013-04-05
Sampling location
Chile (Tolten, La Araucania)

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-05-23 01:47lulloazRESTRICTED until 2027-05-22
Data use terms URL

Host

Host

Sequencing

Sequencing instrument
MinION Mk1D

Submission details

Submission ID
R175
Submitting group
Date submitted
2026-05-23 01:47:46 UTC
Date released
2026-05-23 01:48:43 UTC
Earliest release date
2026-05-23

Alignment and QC

Length M
3604 (98.2%)
# of SNPs M
201
Length S
1798 (95.9%)
# of SNPs S
125
# of inserted bases S
5
# of deleted bases S
2
Length L
6481 (91.4%)
# of SNPs L
356
# of deleted bases L
1
# of unknown bases L
483
# of frame shifts L
1
Frame shifts L
RdRp:1159-2154(nt:3508-6497)

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

  • T47C
  • G62A
  • C74T
  • C131T
  • C146T
  • C147T
  • G149A
  • C155T
  • C173T
  • T182C
  • T215C
  • A218G
  • A233C
  • C254T
  • T278C
  • A296G
  • T297C
  • A302G

M

  • G45A
  • T74C
  • T90C
  • G114A
  • C147T
  • C174T
  • C190T
  • A192G
  • C231T
  • C243T
  • A264G
  • A291G
  • T312C
  • C315T
  • G339C
  • T345C
  • A360G
  • T363C

S

  • G63A
  • G66A
  • G120A
  • A135G
  • T202C
  • A219G
  • T225C
  • T244C
  • T306C
  • A312G
  • G315A
  • A318G
  • C417T
  • C444A
  • G450A
  • T454C
  • C459T
  • G465A
Deletions

L

3507

S

1443, 1573
Insertions

S

ins_1486:T, ins_1555:A, ins_1631:TT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

GPC

  • GPC:V8A
  • GPC:I114V
  • GPC:I288M
  • GPC:H294Y
  • GPC:V346I
  • GPC:T353V
  • GPC:I537V
  • GPC:T1023A
  • GPC:S1055T
  • GPC:V1127I

NSs

  • NSs:Q5R
  • NSs:E33G
  • NSs:L35S
  • NSs:I62T

RdRp

  • RdRp:T141I
  • RdRp:L277S
  • RdRp:S338A
  • RdRp:R346K
  • RdRp:I402V
  • RdRp:A541V
  • RdRp:D780N
  • RdRp:N1033D
Deletions

RdRp

RdRp:1158
Insertions
N/A

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