PP_00701C2.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Chile/PP_00701C2.1/2014-02-09

Lissette Ulloa-Zepeda, Catalina Pavez & Cecilia Vial

Programa Hantavirus y Zoonosis, Universidad del Desarrollo Clínica Alemana

Sample details

Collection date

2014-02-09

Sampling location

Chile (Lonquimay, La Araucania)

Data use terms

Changed	User	Data use terms
2026-05-23 01:47	lulloaz	RESTRICTED until 2027-05-22

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Host

mice and others (Oligoryzomys longicaudatus)

Sequencing

Sequencing instrument

MinION Mk1D

Submission details

Submission ID

R745

Submitting group

Programa Hantavirus y Zoonosis

Date submitted

2026-05-23 01:47:46 UTC

Date released

2026-05-23 01:48:43 UTC

Earliest release date

2026-05-23

Alignment and QC

Length S

1799 (95.9%)

# of SNPs S

116

# of inserted bases S

# of deleted bases S

Length L

6482 (91.4%)

# of SNPs L

393

# of unknown bases L

485

Length M

3604 (98.1%)

# of SNPs M

243

# of unknown bases M

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
C74T
C131T
C146T
G149A
C155T
A188G
A200G
C219T
C254T
G263A
T269C
A296G
A302G
C305T
T308C
C311T
A314G

M

T66C
T74C
G114A
C159T
T168C
C171T
T177C
C180T
A186G
C190T
G198A
T202C
C231T
T246C
T252C
G271A
G276A
C315T

S

G66A
G120A
A135G
A219G
T225C
T244C
T306C
A312G
G315A
T357C
T363C
G378A
T405C
C417T
C444A
G450A
T454C
C459T

Deletions

S

1443, 1573

Insertions

S

ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references