PP_006XXY5.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Democratic_Republic_of_the_Congo/PP_006XXY5.1/2026-05-20
Till D. Best, Julia Melchert, Tiina Mauno, Nikolai W. Zaki, Talitha Veith, Tobias Bleicker, Terry C. Jones, Christian Drosten & Victor M. Corman

Charité - Universitätsmedizin, Institute of Virology

Sample details

Collection date
2026-05-20
Sample received date
2026-05-20
Sampling location
Democratic Republic of the Congo

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-05-21 14:10talithaveithRESTRICTED until 2027-05-21
Data use terms URL

Outbreak

Outbreak
Bdbv-2026

Sampling

Sample type
Oropharyngeal swab [OBI:0002608]
Collection device
Swab [GENEPIO:0100027]
Collection method
Swab [GENEPIO:0100027]

Host

Host

Sequencing

Sequencing date
2026-05-20
Sequencing instrument
Illumina MiniSeq
Sequenced by - organization
Charité - Universitätsmedizin, Institute of Virology
Sequenced by - contact name
Christian Drosten
Reference genome accession
PP_006XHL9.2
Consensus sequence software name
Geneious
Depth of coverage
41

Submission details

Submission ID
D26-00882
Version comment
Draft sequence version of 20.05.2026 provided by the listed sequence authors. Correspondence: Christian Drosten
Submitting group
Date submitted
2026-05-21 14:10:39 UTC
Date released
2026-05-21 14:14:08 UTC
Earliest release date
2026-05-21

Alignment and QC

Length
18903 (99.8%)
# of SNPs
217
# of inserted bases
1

Nucleotide mutations

Mutations called relative to the NC_014373.1 reference

Substitutions

  • C135T
  • C261T
  • A266G
  • C530T
  • T586C
  • G832A
  • C1018T
  • A1066G
  • T1375C
  • T1405C
  • C1675A
  • C1702T
  • T1774G
  • G1924A
  • A1943G
  • A1954G
  • A2007G
  • G2027A
Deletions
N/A
Insertions

ins_18902:A

Amino acid substitutions

Substitutions called relative to the NC_014373.1 reference

Substitutions

GP

  • GP:Y151F
  • GP:E188K
  • GP:P365S
  • GP:P367L
  • GP:Y387H
  • GP:P389L
  • GP:R394G
  • GP:T458I
  • GP:P481L
  • GP:T486I
  • GP:A489V
  • GP:R506S

GP_003

  • GP_003:Y151F
  • GP_003:E188K
  • GP_003:T320I
  • GP_003:P328L
  • GP_003:Q367*

L

  • L:V402I
  • L:L1011F
  • L:S1323A
  • L:N1342H
  • L:K1570R
  • L:L1595Q
  • L:I1664R
  • L:K1738N
  • L:Q1770R
  • L:N1771D
  • L:I1784V
  • L:R1954G
  • L:E1969D
  • L:A2191V

NP

  • NP:N496D
  • NP:Q517R
  • NP:G524S
  • NP:V531A
  • NP:R537K
  • NP:V544I
  • NP:D546N
  • NP:A569V

VP24

  • VP24:S24N

VP30

  • VP30:H5Y

VP35

  • VP35:N79S
  • VP35:G187E
  • VP35:M192I

VP40

  • VP40:I14M
  • VP40:A31S
Deletions
N/A
Insertions
N/A

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