PP_006XLQY.1

Brazil/ITpS_QGX_001M1_001/2026-01-19
L. Silva, M. Oliveira, F. Hurtado, H. Magalhães, L. Martins, V. Monteiro, L. Araújo & L. Velasco

Grupo Sabin

Sample details

Collection date
2026-01-19
Sampling location
Brazil (Mato Grosso)
City
Cuiabá

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.2

Host

Host
Host age
37
Host gender
Female

Sequencing

Depth of coverage
477

Submission details

Submission ID
ITpS_QGX_001M1_001
Submitting group
Date submitted
2026-05-19 18:48:29 UTC
Date released
2026-05-19 18:48:51 UTC
Earliest release date
2026-05-19

Alignment and QC

Length
13894 (74%)
# of SNPs
109
# of inserted bases
2
# of deleted bases
60
# of unknown bases
2687

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C994T
  • G1028A
  • A1132G
  • G1385A
  • G1417A
  • T1474C
  • G1732A
  • G1768A
  • T1846C
  • C2074T
  • C2198T
  • T2403A
  • C2554T
  • C2691T
  • G3036C
  • C3082T
  • C3146T
  • C3169T
Deletions
5399-5458
Insertions
ins_4033:T, ins_7579:N

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:F12I
  • F:S190N
  • F:S389P

G

  • G:A74V
  • G:S100G
  • G:A116T
  • G:T131A
  • G:I137T
  • G:S138Y
  • G:P214S
  • G:P245S
  • G:S275P
  • G:K276E
  • G:S295F
  • G:S307P

L

  • L:S169P
  • L:K186R
  • L:I1751V
  • L:R1759K

M2-2

  • M2-2:I2T
  • M2-2:S24N
  • M2-2:M27T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

P

  • P:D33E
Deletions

G

G:252-271
Insertions
N/A

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