PP_006XLN2.1

Brazil/ITpS_kSA_001MD_001/2026-03-04
L. Silva, M. Oliveira, F. Hurtado, H. Magalhães, L. Martins, V. Monteiro, L. Araújo & L. Velasco

Grupo Sabin

Sample details

Collection date
2026-03-04
Sampling location
Brazil (Amazonas)
City
Manaus

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
1
Host gender
Male

Sequencing

Depth of coverage
545

Submission details

Submission ID
ITpS_kSA_001MD_001
Submitting group
Date submitted
2026-05-19 18:48:29 UTC
Date released
2026-05-19 18:48:51 UTC
Earliest release date
2026-05-19

Alignment and QC

Length
14808 (86.9%)
# of SNPs
127
# of inserted bases
4
# of deleted bases
61
# of unknown bases
1630
# of frame shifts
1
Frame shifts
G:310-311(nt:5573-5578)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C152A
  • C212T
  • G513T
  • C564T
  • T707C
  • C994T
  • G1385A
  • C1714A
  • C1792T
  • G1963A
  • A2038G
  • C2074T
  • C2198T
  • T2340C
  • C2484T
  • A2518G
  • T2697C
  • G2787A
Deletions
5399-5458, 5583
Insertions
ins_967:N, ins_4032:N, ins_5572:N, ins_7579:N

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S

L

  • L:K260R
  • L:M646L
  • L:R1759K
  • L:R1872K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:D32E

P

  • P:T72A
Deletions

G

G:252-271
Insertions
N/A

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