PP_006XLL6.1

Brazil/ITpS_AtK_001M8_001/2026-02-18
L. Silva, M. Oliveira, F. Hurtado, H. Magalhães, L. Martins, V. Monteiro, L. Araújo & L. Velasco

Grupo Sabin

Sample details

Collection date
2026-02-18
Sampling location
Brazil (Distrito Federal)
City
Brasília

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1

Host

Host
Host age
14
Host gender
Female

Sequencing

Depth of coverage
11

Submission details

Submission ID
ITpS_AtK_001M8_001
Submitting group
Date submitted
2026-05-19 18:48:29 UTC
Date released
2026-05-19 18:48:51 UTC
Earliest release date
2026-05-19

Alignment and QC

Length
14330 (78.4%)
# of SNPs
135
# of inserted bases
3
# of unknown bases
2398

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C688T
  • T707C
  • G830A
  • C994T
  • G1385A
  • G1519A
  • C1717T
  • G1732A
  • C2074T
  • C2198T
  • C2554T
  • A2685T
  • C2691T
  • A2928G
  • G3036C
  • C3082T
  • T3095C
  • C3132T
Deletions
N/A
Insertions
ins_967:N, ins_4032:N, ins_7619:N

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:R42K
  • F:S190N
  • F:S211N

G

  • G:A74V
  • G:I87T
  • G:S100G
  • G:I118T
  • G:T131A
  • G:I137T
  • G:F166Y
  • G:P214S
  • G:L250P
  • G:I252T
  • G:K256N
  • G:S265P
  • G:I268T
  • G:S275P
  • G:Y285H

L

  • L:R1759K
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:N32S
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I

NS2

  • NS2:E83K
Deletions
N/A
Insertions
N/A

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