PP_006XLK8.1

Brazil/ITpS_Mjz_001M0_001/2026-01-12
L. Silva, M. Oliveira, F. Hurtado, H. Magalhães, L. Martins, V. Monteiro, L. Araújo & L. Velasco

Grupo Sabin

Sample details

Collection date
2026-01-12
Sampling location
Brazil (Amazonas)
City
Manaus

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
10
Host gender
Female

Sequencing

Depth of coverage
12

Submission details

Submission ID
ITpS_Mjz_001M0_001
Submitting group
Date submitted
2026-05-19 18:48:29 UTC
Date released
2026-05-19 18:48:51 UTC
Earliest release date
2026-05-19

Alignment and QC

Length
14785 (87.1%)
# of SNPs
147
# of inserted bases
3
# of deleted bases
60
# of unknown bases
1580

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C152A
  • C212T
  • G513T
  • C564T
  • G579A
  • C598T
  • T707C
  • T907C
  • C952A
  • G955A
  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • C1792T
  • T1846C
  • A1885G
  • A1897G
Deletions
5399-5458
Insertions
ins_967:N, ins_4032:N, ins_7579:N

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:A74V
  • G:K85E
  • G:S100G
  • G:T131A
  • G:I137T
  • G:P214S

L

  • L:K260R
  • L:M646L
  • L:R1759K
  • L:R1872K
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I

NS1

  • NS1:D32E

NS2

  • NS2:N123K
Deletions

G

G:252-271
Insertions
N/A

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