PP_006XLJA.1

Brazil/ITpS_yTw_001MA_001/2026-02-20
L. Silva, M. Oliveira, F. Hurtado, H. Magalhães, L. Martins, V. Monteiro, L. Araújo & L. Velasco

Grupo Sabin

Sample details

Collection date
2026-02-20
Sampling location
Brazil (Distrito Federal)
City
Brasília

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1

Host

Host
Host age
73
Host gender
Female

Sequencing

Depth of coverage
12

Submission details

Submission ID
ITpS_yTw_001MA_001
Submitting group
Date submitted
2026-05-19 18:48:29 UTC
Date released
2026-05-19 18:48:51 UTC
Earliest release date
2026-05-19

Alignment and QC

Length
14808 (87.7%)
# of SNPs
124
# of inserted bases
3
# of deleted bases
60
# of unknown bases
1511

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G513T
  • G579A
  • G740A
  • T1366C
  • G1385A
  • G1732A
  • C2074T
  • C2198T
  • C2691T
  • G2901A
  • T3006C
  • G3036C
  • C3082T
  • T3095C
  • T3096C
  • C3146T
  • C3169T
  • C3180T
Deletions
5399-5458
Insertions
ins_967:N, ins_4032:N, ins_7588:N

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:N116D
  • F:L173A
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:R8H
  • G:A74V
  • G:S100G
  • G:T131A
  • G:T133P
  • G:I137T
  • G:P214S
  • G:L217P
  • G:P245S
  • G:*311Q

L

  • L:S8N
  • L:V139L
  • L:Q168K
  • L:Y254C
  • L:S610P
  • L:R1759K
  • L:I1950T
  • L:T1987I
  • L:S2076G

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:D35N

N

  • N:V97I

NS2

  • NS2:D53N
Deletions

G

G:252-271
Insertions
N/A

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