PP_006XLHC.1

Brazil/ITpS_gxS_001MJ_001/2026-03-11
L. Silva, M. Oliveira, F. Hurtado, H. Magalhães, L. Martins, V. Monteiro, L. Araújo & L. Velasco

Grupo Sabin

Sample details

Collection date
2026-03-11
Sampling location
Brazil (Goiás)
City
Luziânia

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1

Host

Host
Host age
1
Host gender
Male

Sequencing

Depth of coverage
457

Submission details

Submission ID
ITpS_gxS_001MJ_001
Submitting group
Date submitted
2026-05-19 18:48:29 UTC
Date released
2026-05-19 18:48:51 UTC
Earliest release date
2026-05-19

Alignment and QC

Length
14782 (87.3%)
# of SNPs
114
# of inserted bases
3
# of deleted bases
60
# of unknown bases
1551

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • T144C
  • C212T
  • T357C
  • A386G
  • G434A
  • G513T
  • G579A
  • T1273C
  • G1385A
  • G1732A
  • T1846C
  • A2059T
  • C2074T
  • C2198T
  • C2554T
  • A2649G
  • C2691T
  • G3036C
Deletions
5399-5458
Insertions
ins_967:N, ins_4032:N, ins_7582:N

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:V94I
  • G:E97D
  • G:S100G
  • G:T131A
  • G:I137T
  • G:N154D
  • G:P214S
  • G:S307L

L

  • L:S173L
  • L:V715I
  • L:N1652S
  • L:R1759K
  • L:T1987I
  • L:A2014S

M2-2

  • M2-2:D35N

N

  • N:V97I

NS1

  • NS1:Y30H
  • NS1:M126I

SH

  • SH:I49P
Deletions

G

G:252-271
Insertions
N/A

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