PP_006XLGF.1

Brazil/ITpS_Dvg_001MB_001/2026-02-24
L. Silva, M. Oliveira, F. Hurtado, H. Magalhães, L. Martins, V. Monteiro, L. Araújo & L. Velasco

Grupo Sabin

Sample details

Collection date
2026-02-24
Sampling location
Brazil (Distrito Federal)
City
Brasília

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.E.1.2

Host

Host
Host age
1
Host gender
Female

Sequencing

Depth of coverage
12

Submission details

Submission ID
ITpS_Dvg_001MB_001
Submitting group
Date submitted
2026-05-19 18:48:29 UTC
Date released
2026-05-19 18:48:51 UTC
Earliest release date
2026-05-19

Alignment and QC

Length
14808 (86.7%)
# of SNPs
122
# of inserted bases
3
# of deleted bases
60
# of unknown bases
1674

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G513T
  • G579A
  • C583T
  • G599A
  • C829T
  • C994T
  • G1028A
  • A1132G
  • G1385A
  • G1417A
  • A1507G
  • G1732A
  • G1768A
  • T1846C
  • C1910T
  • C2074T
  • C2198T
  • C2691T
Deletions
5399-5458
Insertions
ins_967:N, ins_4032:N, ins_7579:N

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:F12I
  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:A74V
  • G:R98W
  • G:S100G
  • G:A116T
  • G:T131A
  • G:I137T
  • G:P214S
  • G:P245S
  • G:S275P
  • G:K276E
  • G:Y285H
  • G:S307L

L

  • L:I1751V
  • L:T1987I

M2-2

  • M2-2:I2T
  • M2-2:S24N
  • M2-2:M27T
  • M2-2:D35N

N

  • N:V97I

NS2

  • NS2:D6N
Deletions

G

G:252-271
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue