Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Uganda/PP_006XCJJ.1/2026-05-14
Stephen Kanyerezi, Alisen Ayitewala, Andrew Nsawotebba, Hellen Rosette Oundo, Julius Sseruyange, Wilson Tenywa, Godwin Tusabe, Moses Murungi, Valeria Nakintu, Caroline Makoha, Jupiter Marina Kabahita, Ibrahim Mugerwa, Ddumba Semakuba Francis, Atek Kagirita, Benard Lubwama, Roggers Michael Eilu, Morgan Otita, Samuel Giduddu, Aloysious Ssemaganda, Susan Nabadda & Isaac Ssewanyana

Department of National Health Laboratory and Diagnostics Services, Central Public Health Laboratories (NHLDS-CPHL), Ministry of Health, P.O. Box 7272, Kampala, Uganda; The African Center of Excellence in Bioinformatics and Data-Intensive Sciences, the Infectious Diseases Institute, College of Health Sciences, Makerere University, P.O Box 22418, Kampala, Uganda; Department of Immunology and Molecular Biology, School of Biomedical Sciences, College of Health Sciences, Makerere University, P.O Box 7072, Kampala, Uganda; National Public Health Emergency Operations Center-PEOC, Ministry of Health; Department of Global Health Security, Infectious Diseases Institute, Makerere University, Kampala, Uganda; Uganda National Institute of Public Health, Ministry of Health; Infectious Diseases Research Collaboration, Kampala, Uganda

Sample details

Collection date
2026-05-14
Sample received date
2026-05-15
Sampling location
Uganda (Hoima, Uganda)
Isolate name
CL023114
Culture ID
NA

Data use terms

Data use terms
RESTRICTED

Sampling

Collection device
EDTA tube
Collection method
Phlebotomy

Sequencing

Sequencing date
2026-05-16
Sequencing instrument
Illumina NextSeq 2000
Sequencing protocol
Illumina DNA library Prep with enrichment
Depth of coverage
4471

Submission details

Comment
NA
Submission ID
CL023114
Version comment
One
Submitting group
Date submitted
2026-05-17 18:14:42 UTC
Date released
2026-05-17 18:16:44 UTC
Earliest release date
2026-05-17

Alignment and QC

Length
18886 (99.7%)
# of SNPs
219
# of ambiguous bases
1
# of stop codons
1
Stop Codons
GP_003:367

Nucleotide mutations

Mutations called relative to the NC_014373.1 reference

Substitutions

  • C135T
  • C261T
  • A266G
  • C530T
  • T586C
  • G832A
  • C1018T
  • A1066G
  • T1375C
  • T1405C
  • C1675A
  • C1702T
  • T1774G
  • G1924A
  • A1943G
  • A1954G
  • A2007G
  • G2027A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_014373.1 reference

Substitutions

GP

  • GP:Y151F
  • GP:E188K
  • GP:P365S
  • GP:P367L
  • GP:Y387H
  • GP:P389L
  • GP:R394G
  • GP:T458I
  • GP:P481L
  • GP:T486I
  • GP:A489V
  • GP:R506S

GP_003

  • GP_003:Y151F
  • GP_003:E188K
  • GP_003:T320I
  • GP_003:P328L
  • GP_003:Q367*

L

  • L:V402I
  • L:L1011F
  • L:S1323A
  • L:N1342H
  • L:K1570R
  • L:L1595Q
  • L:I1664R
  • L:K1738N
  • L:Q1770R
  • L:N1771D
  • L:I1784V
  • L:R1954G
  • L:E1969D
  • L:A2191V

NP

  • NP:N496D
  • NP:Q517R
  • NP:G524S
  • NP:V531A
  • NP:R537K
  • NP:V544I
  • NP:D546N
  • NP:A569V

VP24

  • VP24:S24N

VP30

  • VP30:H5Y

VP35

  • VP35:N79S
  • VP35:G187E
  • VP35:M192I

VP40

  • VP40:I14M
  • VP40:A31S
Deletions
N/A
Insertions
N/A

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