PP_006XCJJ.1

Uganda/PP_006XCJJ.1/2026-05-14
Stephen Kanyerezi, Alisen Ayitewala, Andrew Nsawotebba, Hellen Rosette Oundo, Julius Sseruyange, Wilson Tenywa, Godwin Tusabe, Moses Murungi, Valeria Nakintu, Caroline Makoha, Jupiter Marina Kabahita, Ibrahim Mugerwa, Ddumba Semakuba Francis, Atek Kagirita, Benard Lubwama, Roggers Michael Eilu, Morgan Otita, Samuel Giduddu, Aloysious Ssemaganda, Susan Nabadda & Isaac Ssewanyana

Department of National Health Laboratory and Diagnostics Services, Central Public Health Laboratories (NHLDS-CPHL), Ministry of Health, P.O. Box 7272, Kampala, Uganda; The African Center of Excellence in Bioinformatics and Data-Intensive Sciences, the Infectious Diseases Institute, College of Health Sciences, Makerere University, P.O Box 22418, Kampala, Uganda; Department of Immunology and Molecular Biology, School of Biomedical Sciences, College of Health Sciences, Makerere University, P.O Box 7072, Kampala, Uganda; National Public Health Emergency Operations Center-PEOC, Ministry of Health; Department of Global Health Security, Infectious Diseases Institute, Makerere University, Kampala, Uganda; Uganda National Institute of Public Health, Ministry of Health; Infectious Diseases Research Collaboration, Kampala, Uganda

Sample details

Collection date
2026-05-14
Sample received date
2026-05-15
Sampling location
Uganda (Hoima, Uganda)
Isolate name
CL023114
Culture ID
NA

Data use terms

Data use terms
OPEN
Data use terms URL

Outbreak

Outbreak
Bdbv-2026

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Collection device
EDTA tube
Collection method
Phlebotomy

Host

Host

Sequencing

Sequencing date
2026-05-16
Sequencing instrument
Illumina NextSeq 2000
Sequencing protocol
Illumina DNA library Prep with enrichment
Depth of coverage
4471

Submission details

Comment
NA
Submission ID
CL023114
Version comment
One
Submitting group
Date submitted
2026-05-17 18:14:42 UTC
Date released
2026-05-17 18:16:44 UTC
Earliest release date
2026-05-17

Cited in

  • Clinical profile and genomic characterization of the 2026 Bundibugyo virus index case in Uganda (2026)
    Andrew Nsawotebba, Isaac Ssewanyana, Alisen Ayitewala, Misaki Wayengera, Stephen Kanyerezi, Jonathan Kabazzi, Valeria Nakintu, Aloysious Ssemaganda, Rodney Kisuule, Steven Ssekyondwa, Hellen Rosette Oundo, Ronald Kasujja, Amable Ayebare, Stephen Balinandi, Godfrey Pimundu, Tonny Muyigi, Godrine Mayanja Byekwaso, Ibrahim Mugerwa, Francis Kakooza, Susan Namboozo, Aidah Namakula, Judith Kyokushaba, Moses Joloba, Winters Mutamba, Mudarshiru Bbuye, Bruce Kirenga, Pontiano Kaleebu, Wilber Sabiiti, Reginald Rony Bahatungire, Caroline Achola, Sulaiman Ikoba, Allan Muruta, Bernard Lubwama, Atek Kagirita, Henry Kyobe Bosa, Jane Ruth Aceng, Susan Nabadda, Charles Olaro, Diana Atwine
    From SeqSet:PP_SS_1618.5(references PP_006XCJJ.1)

Alignment and QC

Length
18886 (99.7%)
# of SNPs
219
# of ambiguous bases
1

Nucleotide mutations

Mutations called relative to the NC_014373.1 reference

Substitutions
  • C135T
  • C261T
  • A266G
  • C530T
  • T586C
  • G832A
  • C1018T
  • A1066G
  • T1375C
  • T1405C
  • C1675A
  • C1702T
  • T1774G
  • G1924A
  • A1943G
  • A1954G
  • A2007G
  • G2027A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_014373.1 reference

Substitutions

GP

  • GP:Y151F
  • GP:E188K
  • GP:P365S
  • GP:P367L
  • GP:Y387H
  • GP:P389L
  • GP:R394G
  • GP:T458I
  • GP:P481L
  • GP:T486I
  • GP:A489V
  • GP:R506S

GP_003

  • GP_003:Y151F
  • GP_003:E188K
  • GP_003:T320I
  • GP_003:P328L
  • GP_003:Q367*

L

  • L:V402I
  • L:L1011F
  • L:S1323A
  • L:N1342H
  • L:K1570R
  • L:L1595Q
  • L:I1664R
  • L:K1738N
  • L:Q1770R
  • L:N1771D
  • L:I1784V
  • L:R1954G
  • L:E1969D
  • L:A2191V

NP

  • NP:N496D
  • NP:Q517R
  • NP:G524S
  • NP:V531A
  • NP:R537K
  • NP:V544I
  • NP:D546N
  • NP:A569V

VP24

  • VP24:S24N

VP30

  • VP30:H5Y

VP35

  • VP35:N79S
  • VP35:G187E
  • VP35:M192I

VP40

  • VP40:I14M
  • VP40:A31S
Deletions
N/A
Insertions
N/A

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