PP_006XBKH.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

France/PP_006XBKH.1/2026-05-10

Aurélia Kwasiborski, Lucie Cappuccio, Jessica Vanhomwegen, Véronique Hourdel, Dieyenaba Siby-Diakite, Laurent Dacheux, Jean-Claude Manuguerra, Virginie Sauvage & Sarah. Temmam

Institut Pasteur, Université Paris Cité, Environment and Infectious Risk Research Unit - Laboratory for Urgent Response to Biological Threats (ERI-CIBU) - French National Reference Center for Hantaviruses

Sample details

Collection date

2026-05-10

Sample received date

2026-05-11

Sampling location

France

Data use terms

Changed	User	Data use terms
2026-05-17 08:23	stemmam	RESTRICTED until 2027-05-17

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Host

human (Homo sapiens)

Sequencing

Sequencing date

2026-05-14

Sequencing instrument

Illumina MiSeq i100

Sequencing protocol

Random mNGS (Smart-Seq Takara)

Submission details

Submission ID

26-0090|France|Homo_sapiens|2026-05-10

Submitting group

Institut Pasteur_ERI-CIBU-CNR

Date submitted

2026-05-17 08:23:54 UTC

Date released

2026-05-17 08:24:14 UTC

Earliest release date

2026-05-17

Alignment and QC

Length L

6545 (99.7%)

# of SNPs L

388

Length M

3654 (99.4%)

# of SNPs M

209

# of inserted bases M

Length S

1859 (99.1%)

# of SNPs S

127

# of inserted bases S

# of deleted bases S

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

T47C
G62A
T68G
C74T
C131T
C146T
C147T
G149A
C155T
C173T
T182C
T215C
A218G
A233C
T278C
A296G
T297C
A302G

M

G45A
T74C
T90C
G114A
C147T
C174T
C190T
A192G
C231T
C243T
A264G
T312C
C315T
G339C
T345C
A360G
T363C
A381G

S

G63A
G66A
G120A
A135G
T202C
A219G
T225C
T244C
T306C
G315A
A318G
C328T
C417T
C444A
G450A
T454C
C459T
G465A

Deletions

S

1443, 1573

Insertions

M

ins_3497:ATTG

S

ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references