PP_006W6RC.2

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Netherlands/PP_006W6RC.2/2026-05-03

Moussa Moise Diagne, Safietou Sankhe, Ndeye Awa Ndiaye, Mouhamed Kane, Seynabou M. B. S. Diop, Seynabou Seye & Gamou Fall

Institut Pasteur de Dakar

Sample details

Collection date

2026-05-03

Sampling location

Netherlands

Data use terms

Changed	User	Data use terms
2026-05-11 00:52	awa	RESTRICTED until 2027-05-11

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Host

human (Homo sapiens)

Sequencing

Sequencing date

2026-05-07

Sequencing instrument

Illumina iSeq 100

Sequencing protocol

Hybrid Capture with Twist Comprehensive Viral Research Panel

Submission details

Submission ID

IPD509963

Submitting group

Genomic Platform IPD

Date submitted

2026-05-11 20:19:13 UTC

Date released

2026-05-11 20:19:22 UTC

Earliest release date

2026-05-11

Alignment and QC

Length M

3633 (98.7%)

# of SNPs M

207

# of inserted bases M

Length S

1829 (97.5%)

# of SNPs S

127

# of inserted bases S

# of deleted bases S

Length L

6456 (93.8%)

# of SNPs L

361

# of unknown bases L

298

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

C131T
C146T
C147T
G149A
C155T
C173T
T182C
T215C
A218G
A233C
T278C
A296G
T297C
A302G
T326C
T329C
T332C
T344C

M

G45A
T74C
T90C
G114A
C147T
C174T
C190T
A192G
C231T
C243T
A264G
T312C
C315T
G339C
T345C
A360G
T363C
A381G

S

G63A
G66A
G120A
A135G
T202C
A219G
T225C
T244C
T306C
G315A
A318G
C328T
C417T
C444A
G450A
T454C
C459T
G465A

Deletions

S

1443, 1573

Insertions

M

ins_3499:NNNNTTTA

S

ins_1486:TT, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references