PP_006W3U9.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.

Netherlands/PP_006W3U9.1/2026-05-06

B. B. Oude Munnink, D. Nieuwenhuijsse, S. van der Boom, L. Zaeck, M. Boter, H. Cassidy, L. Schuele, R. Molenkamp, A. van der Eijk, C. GeurtsvanKessel & M. Koopmans

ErasmusMC

Sample details

Collection date

2026-05-06

Sampling location

Netherlands

Data use terms

Changed	User	Data use terms
2026-05-10 18:51	boudemunnink	RESTRICTED until 2027-05-10

RESTRICTED

Data use terms URL

https://pathoplexus.org/about/terms-of-use/restricted-data

Host

human (Homo sapiens)

Submission details

Submission ID

EMC_case_1

Submitting group

ErasmusMC Viroscience

Date submitted

2026-05-10 18:51:24 UTC

Date released

2026-05-10 18:56:14 UTC

Earliest release date

2026-05-10

Alignment and QC

Length M

3561 (97%)

# of SNPs M

207

Length S

1807 (96.4%)

# of SNPs S

127

# of inserted bases S

# of deleted bases S

Length L

6456 (93.8%)

# of SNPs L

361

# of unknown bases L

298

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

C131T
C146T
C147T
G149A
C155T
C173T
T182C
T215C
A218G
A233C
T278C
A296G
T297C
A302G
T326C
T329C
T332C
T344C

M

T74C
T90C
G114A
C147T
C174T
C190T
A192G
C231T
C243T
A264G
T312C
C315T
G339C
T345C
A360G
T363C
A381G
T387C

S

G63A
G66A
G120A
A135G
T202C
A219G
T225C
T244C
T306C
G315A
A318G
C328T
C417T
C444A
G450A
T454C
C459T
G465A

Deletions

S

1443, 1573

Insertions

S

ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references