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PP_006W1SF.1
Download
Download FASTA
Download metadata TSV
Argentina/PP_006W1SF.1/2018
D. O. Alonso,
S. D. Kehl,
R. M. Coelho,
N. Periolo,
J. Campos,
T. Poklepovich Caride,
U. Perez-Sautu,
M. Sanchez-Lockhart,
G. Palacios,
C. M. Bellomo &
V. P. Martinez
Malbran Institute, Virology
Sample details
Collection date
2018
Sampling location
Argentina (Buenos Aires)
Isolate name
BA18-LD1633
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-09 17:55
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PP003837.1
INSDC accession M
PP151164.1
NCBI release date
2024-09-14
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PP003837.1.L/PP151164.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-09 17:55:42 UTC
Date released
2026-05-09 17:57:47 UTC
Earliest release date
2024-09-14
Alignment and QC
Length M
3613 (98.9%)
# of SNPs M
772
# of inserted bases M
6
# of deleted bases M
24
Length L
6587 (99.9%)
# of SNPs L
1333
# of inserted bases L
30
# of deleted bases L
1
# of frame shifts L
1
Frame shifts L
RdRp:2155(nt:6497)
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
L
G
31
A
T
47
C
G
62
A
A
65
G
C
74
G
C
75
T
T
77
G
T
83
A
C
88
G
G
89
T
T
91
C
A
92
T
A
101
G
A
104
G
C
107
T
T
113
C
C
117
T
T
122
C
Show more
M
A
32
C
T
34
G
A
37
G
G
38
A
G
43
T
G
45
T
T
46
A
T
47
G
T
48
A
C
67
T
G
70
A
T
75
C
C
76
T
T
78
G
A
89
C
G
93
T
C
94
T
C
111
G
Show more
Deletions
L
6533
M
3479, 3480, 3492-3497, 3515-3520, 3528, 3529, 3549, 3559-3565
Insertions
L
ins_6496:A, ins_6528:A, ins_6549:T, ins_6553:CTGTGTCCAC, ins_6562:AGTGGATTTTATATCTT
M
ins_51:G, ins_3469:TAGTC
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
7
I
GPC:
Y
13
S
GPC:
I
42
V
GPC:
S
51
P
GPC:
A
54
T
GPC:
I
58
L
GPC:
A
74
T
GPC:
F
78
Y
GPC:
S
97
A
GPC:
A
102
S
GPC:
T
104
V
GPC:
I
114
V
GPC:
P
117
A
GPC:
L
153
I
GPC:
T
167
N
GPC:
V
172
I
GPC:
S
199
A
GPC:
D
206
E
Show more
RdRp
RdRp:
D
13
E
RdRp:
T
18
S
RdRp:
V
19
A
RdRp:
V
53
I
RdRp:
I
70
V
RdRp:
S
84
T
RdRp:
V
87
I
RdRp:
Y
99
F
RdRp:
I
126
L
RdRp:
G
130
E
RdRp:
Q
133
K
RdRp:
H
137
S
RdRp:
T
141
V
RdRp:
S
143
A
RdRp:
I
148
L
RdRp:
P
149
T
RdRp:
P
151
A
RdRp:
K
153
R
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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