PP_006W1E6.1

Argentina/PP_006W1E6.1/2018
D. O. Alonso, S. D. Kehl, R. M. Coelho, N. Periolo, J. Campos, T. Poklepovich Caride, U. Perez-Sautu, M. Sanchez-Lockhart, G. Palacios, C. M. Bellomo & V. P. Martinez

Malbran Institute, Virology

Sample details

Collection date
2018
Sampling location
Argentina (Buenos Aires)
Isolate name
BA18-RR1620

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 17:55insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession S
NCBI release date
2024-09-06

Host

Host

Submission details

Submission ID
OR908897.1.S
Submitting group
Date submitted
2026-05-09 17:55:42 UTC
Date released
2026-05-09 17:57:47 UTC
Earliest release date
2024-09-06

Alignment and QC

Length S
1911 (98.5%)
# of SNPs S
308
# of inserted bases S
98
# of deleted bases S
30

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

S

  • G28A
  • G63A
  • G66A
  • C72T
  • G120A
  • G129A
  • G133A
  • A135G
  • C156G
  • T202C
  • C216T
  • A219G
  • T225C
  • G231A
  • A240C
  • T244C
  • T262C
  • T306C
Deletions

S

1338, 1339, 1398-1400, 1500, 1527-1532, 1567-1572, 1589, 1632, 1633, 1639, 1650, 1684-1688, 1745, 1746
Insertions

S

ins_1343:TTAAGAGC, ins_1351:CCATGAGAGCCAG, ins_1353:CTAGTCAATATCT, ins_1357:ATTATGTTAGTTGGGTG, ins_1383:T, ins_1453:T, ins_1483:C, ins_1546:ATGTTAAGTCCATA, ins_1586:GAC, ins_1596:GATTAAGTAGATAGAT, ins_1660:AA, ins_1666:GTTAATCA, ins_1756:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

N

  • N:A31T
  • N:D38E
  • N:K120R
  • N:A121S
  • N:G226S
  • N:D234E
  • N:E238D
  • N:V252A
  • N:A253P
  • N:S259A
  • N:M263A
  • N:I281V
  • N:E297D
  • N:S332A

NSs

  • NSs:R3K
  • NSs:Q5R
  • NSs:T12R
  • NSs:S32L
  • NSs:E33G
  • NSs:L35S
  • NSs:G37D
  • NSs:Q40P
  • NSs:I62T
Deletions
N/A
Insertions
N/A

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