PP_006W1CA.1

Argentina/PP_006W1CA.1/2011
D. O. Alonso, S. D. Kehl, R. M. Coelho, N. Periolo, J. Campos, T. Poklepovich Caride, U. Perez-Sautu, M. Sanchez-Lockhart, G. Palacios, C. M. Bellomo & V. P. Martinez

Malbran Institute, Virology

Sample details

Collection date
2011
Sampling location
Argentina (Buenos Aires)
Isolate name
BA11-IM1254

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-05-09 17:55insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession S
NCBI release date
2024-09-06

Host

Host

Submission details

Submission ID
OR908895.1.S
Submitting group
Date submitted
2026-05-09 17:55:42 UTC
Date released
2026-05-09 17:57:47 UTC
Earliest release date
2024-09-06

Alignment and QC

Length S
1844 (97%)
# of SNPs S
293
# of inserted bases S
62
# of deleted bases S
33
# of frame shifts S
1
Frame shifts S
N:429(nt:1327-1329)

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

S

  • G33T
  • G63A
  • G66A
  • C72T
  • T117C
  • G120A
  • G129A
  • G133A
  • A135G
  • C156G
  • T225C
  • A234G
  • A240C
  • T262C
  • C310T
  • A312G
  • T327A
  • C328T
Deletions

S

1352, 1353, 1400-1403, 1473, 1500, 1527-1532, 1651-1662, 1717, 1755-1757, 1760-1762
Insertions

S

ins_1326:TAAGAGCCAACAACATG, ins_1344:G, ins_1346:A, ins_1383:T, ins_1451:A, ins_1483:C, ins_1553:GAAT, ins_1568:AGCAT, ins_1587:GTATAGGTTTTGATTAGG, ins_1625:TGT, ins_1637:TT, ins_1639:CATT, ins_1744:TGCT

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

N

  • N:A31T
  • N:D38E
  • N:K120R
  • N:G226S
  • N:D234E
  • N:E238D
  • N:V252A
  • N:A253P
  • N:S259A
  • N:M263A
  • N:I281V
  • N:E297D
  • N:S332A

NSs

  • NSs:R3K
  • NSs:Q5R
  • NSs:T12R
  • NSs:L35S
  • NSs:N38S
  • NSs:Q40P
Deletions
N/A
Insertions

N

ins_N:429:EPTTX

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