PP_006W0VA.1

Brazil/PP_006W0VA.1/2022-12-09

D. Amgarten, E. Dorlass, A. C. dos Santos Soares, A. P. Moreira Salles, A. Takara, A. da Silva Santos, B. S. Oliveira Sartori, R. C. Petroni, C. F. C. Sallum Filho, J. T. Hidal, L. F. A. Camargo, A. Doi & J. R. Rebello Pinho

Hospital Israelita Albert Einstein, Varsomics

Sample details

Collection date

2022-12-09

Sampling location

Brazil

Isolate name

VARS/22-01

Data use terms

Changed	User	Data use terms
2026-05-09 17:55	insdc_ingest_user	OPEN

OPEN

Data use terms URL

https://pathoplexus.org/about/terms-of-use/open-data

INSDC

INSDC accession L

OQ092243.1

INSDC accession M

OQ092244.1

INSDC accession S

OQ092245.1

NCBI release date

2023-01-18

Host

human (Homo sapiens)

Submission details

Submission ID

OQ092243.1.L/OQ092244.1.M/OQ092245.1.S

Submitting group

Automated Ingest from INSDC/NCBI Virus by Loculus

Date submitted

2026-05-09 17:55:42 UTC

Date released

2026-05-09 17:57:47 UTC

Earliest release date

2023-01-18

Alignment and QC

Length M

3387 (92.3%)

# of SNPs M

716

Length S

1912 (98.6%)

# of SNPs S

297

# of inserted bases S

# of deleted bases S

Length L

6538 (99.9%)

# of SNPs L

1286

# of inserted bases L

# of deleted bases L

# of frame shifts L

Frame shifts L

RdRp:2155(nt:6496-6497)

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

L

G44A
C74A
A80T
C88G
G89T
T91C
A104G
C107T
A110G
C114T
A116G
G119T
G125A
C128T
C131T
C137A
C147T
C155T

M

T75C
C76T
T78G
A89C
G93A
C94T
A99G
C111A
G114A
C141T
G144A
T150C
T156A
C159T
C171T
C174T
T177A
C180G

S

T24A
G28A
A42C
T61C
T62A
G63A
C72T
C75T
G99C
C115T
T117G
G120A
C125A
G129A
G133A
A135T
G136C
G138C

Deletions

L

5-27

S

1397, 1398, 1401, 1432, 1500, 1633-1637, 1655-1660, 1670, 1745, 1746, 1755-1757, 1816

Insertions

L

ins_6495:G, ins_6553:GGGTCGC

S

ins_1336:TAATTCAGAGCC, ins_1341:TGCTGTAAGAGCCGATAGTTGTCAAT, ins_1349:AGTTGTGT, ins_1353:TG, ins_1533:A, ins_1539:A, ins_1547:AACTATAGTCTATAT, ins_1557:CATTTAG, ins_1562:AAGA, ins_1584:CA, ins_1594:GATTA, ins_1685:CAT, ins_1760:GCCA, ins_1786:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references