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PP_006V88D.1
Download
Download FASTA
Download metadata TSV
USA/PP_006V88D.1/2026-03-26
H. D. Kunerth,
M. Plumb,
D. Evans,
L. Bohnker-Voels,
K. Pung,
B. Weber,
J. Garfin,
A. Mondelli,
J. Jencks,
M. Anacker &
S. Namugenyi
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
Sample details
Collection date
2026-03-26
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-04522
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-05-01 07:35
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A.D.3
INSDC
INSDC accession
PZ295510.1
BioProject accession
PRJNA1048457
BioSample accession
SAMN57248839
NCBI release date
2026-04-26
NCBI update date
2026-04-26
Raw reads accession
SRR38082547
Host
Host
human (Homo sapiens)
Submission details
Submission ID
PZ295510.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-05-01 07:35:40 UTC
Date released
2026-05-01 07:43:36 UTC
Earliest release date
2026-04-26
Alignment and QC
Length
15049 (91.9%)
# of SNPs
204
# of inserted bases
3
# of deleted bases
1
# of unknown bases
1049
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
C
90
T
A
144
G
C
183
T
C
411
T
G
587
T
T
667
C
G
1034
A
G
1050
A
G
1075
A
G
1077
A
A
1176
G
T
1218
C
T
1284
C
T
1359
C
T
1413
A
T
1422
C
A
1539
G
C
1788
T
Show more
Deletions
4592
Insertions
ins_3154:A, ins_15115:GT
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
T
12
I
F:
E
356
D
G
G:
P
71
L
G:
H
90
Y
G:
L
97
F
G:
L
101
F
G:
T
113
I
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
G
224
E
G:
V
225
A
G:
S
243
T
G:
H
258
Q
G:
K
262
E
G:
I
265
L
G:
H
266
L
G:
Y
273
H
G:
D
284
G
G:
V
303
I
G:
L
310
P
G:
K
321
Q
L
L:
K
76
R
L:
R
256
K
L:
Y
598
H
L:
L
835
M
L:
L
1438
Q
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
I
1780
V
L:
N
2111
D
L:
N
2161
S
M2-1
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
M2-2:
T
77
A
N
N:
V
352
A
P
P:
L
55
P
P:
T
92
M
SH
SH:
F
50
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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