PP_006UCHS.1

USA/PP_006UCHS.1/2026-03-20
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-03-20
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-04446

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-22 01:18insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.2

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-04-14
NCBI update date
2026-04-14
Raw reads accession

Host

Host

Submission details

Submission ID
PZ261169.1
Submitting group
Date submitted
2026-04-22 01:18:48 UTC
Date released
2026-04-22 01:26:25 UTC
Earliest release date
2026-04-14

Alignment and QC

Length
15055 (93.8%)
# of SNPs
241
# of inserted bases
8
# of unknown bases
760

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C156T
  • C183T
  • A280G
  • G348A
  • A414G
  • G587T
  • G590A
  • C604T
  • A608G
  • G664A
  • A682G
  • G1034A
  • G1050A
  • G1077A
  • G1191A
  • G1248A
  • T1284C
Deletions
N/A
Insertions

ins_3154:A, ins_4594:AAAAATA

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:S276N

G

  • G:P71L
  • G:H90Y
  • G:L97F
  • G:G98V
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:P230T
  • G:S243T
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:D284G
  • G:P298L
  • G:Y304H

L

  • L:P171L
  • L:H237Y
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:R1370C
  • L:L1438Q
  • L:G1550S
  • L:I1653V
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:I71V
  • NS1:M93I

NS2

  • NS2:T4A

P

  • P:T92L
Deletions
N/A
Insertions
N/A

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