Pathoplexus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
SeqSets
News
About
Docs
Login
Pathoplexus
Organisms
Crimean-Congo Hemorrhagic Fever Virus
Dengue Virus
Ebola Sudan
Ebola Zaire
HMPV
Marburg Virus
Measles Virus
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Yellow Fever Virus
SeqSets
News
About
Docs
Login
API docs
Governance
Legal notice
Funding
Contact
Status
Crimean-Congo Hemorrhagic Fever Virus
|
Browse data
Submit sequences
Tools
Select organism section
Browse data
Submit sequences
Tools
PP_006U6HY.1
Download
Download FASTA
Download metadata TSV
Turkey/PP_006U6HY.1/2023-06-01
Q. Lin,
N. Elaldi,
M. Yigit,
B. Yildiz,
R. Hewson,
M. Lopez-Garcia,
G. Lythe,
A. N. Pektas,
B. Koksal,
T. N. Tasseten,
A. Deniz,
H. Bedir,
Y. Cakir Kiymaz,
Z. Vatansever,
C. Molina-Paris &
T. Leitner
Kafkas University, Department of Parasitology
Sample details
Collection date
2023-06-01
Sampling location
Turkey (Sivas, Zara, Akoren)
Isolate name
TRKAU/T-363-8/Zara/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-04-22 01:16
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
PX875104.1
INSDC accession M
PX874997.1
NCBI release date
2026-04-19
Host
Host
hard ticks; hardbacked ticks; scale ticks (Hyalomma marginatum)
Submission details
Submission ID
PX875104.1.L/PX874997.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-04-22 01:16:44 UTC
Date released
2026-04-22 01:25:14 UTC
Earliest release date
2026-04-19
Alignment and QC
Length L
12122 (99.9%)
# of SNPs L
1316
# of inserted bases L
32
# of deleted bases L
2
Length M
5336 (99.5%)
# of SNPs M
1043
# of inserted bases M
1
# of deleted bases M
3
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
G
23
T
G
32
A
A
35
G
A
42
T
G
43
C
T
49
C
A
53
G
T
58
C
C
59
T
C
63
T
C
64
G
T
66
C
A
72
G
A
73
C
A
91
G
G
93
A
C
100
T
A
109
G
Show more
M
T
40
A
G
50
A
A
51
G
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
T
83
C
G
84
A
T
86
C
C
92
T
T
100
C
T
102
C
C
103
T
A
108
G
A
112
G
Show more
Deletions
L
12093, 12094
M
321-323
Insertions
L
ins_67:C, ins_11924:G, ins_12108:TTCATTATTTGAAGGGTGTGGGGGGAACGA
M
ins_5171:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
L
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
T
34
N
GPC:
M
35
T
Show more
RdRp
RdRp:
S
6
N
RdRp:
S
19
T
RdRp:
D
55
A
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
L
RdRp:
R
80
K
RdRp:
M
172
V
RdRp:
R
174
K
RdRp:
I
176
M
RdRp:
S
205
P
RdRp:
N
206
Y
RdRp:
K
218
R
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
V
352
I
RdRp:
N
453
S
RdRp:
F
495
Y
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
Report an issue with this sequence or metadata
Create GitHub issue