PP_006U1F8.1

USA/PP_006U1F8.1/2026-03-17
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-03-17
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-04359

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-04-14 10:03insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-04-11
NCBI update date
2026-04-11
Raw reads accession

Host

Host

Submission details

Submission ID
PZ246564.1
Submitting group
Date submitted
2026-04-14 10:03:37 UTC
Date released
2026-04-14 10:11:04 UTC
Earliest release date
2026-04-11

Alignment and QC

Length
15044 (91.7%)
# of SNPs
228
# of inserted bases
1
# of deleted bases
4
# of unknown bases
1089

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G240T
  • G587T
  • C691T
  • G1034A
  • G1049A
  • G1050A
  • G1077A
  • T1312C
  • T1326C
  • T1359C
  • G1368A
  • G1383A
  • A1386G
  • T1413A
  • T1422C
  • A1476C
Deletions

3214, 3215, 4174, 4592
Insertions

ins_3154:A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:L15F
  • F:S276N

G

  • G:P71L
  • G:H90Y
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:P230T
  • G:S243I
  • G:S250L
  • G:H258Q
  • G:K262E
  • G:E263K
  • G:I265L
  • G:H266L

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:I1523V
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:I46L
  • M2-2:P49L
  • M2-2:T77A

N

  • N:E122D
  • N:V352A

P

  • P:T92M

SH

  • SH:Y47H
Deletions
N/A
Insertions
N/A

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