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PP_006RLHQ.1
Download
Download FASTA
Download metadata TSV
USA/PP_006RLHQ.1/2026-02-26
H. D. Kunerth,
M. Plumb,
D. Evans,
L. Bohnker-Voels,
K. Pung,
B. Weber,
J. Garfin,
A. Mondelli,
J. Jencks,
M. Anacker &
S. Namugenyi
Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab
Sample details
Collection date
2026-02-26
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-03951
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-30 03:29
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage
Lineage
A.D.3.11
INSDC
INSDC accession
PZ173789.1
BioProject accession
PRJNA1048457
BioSample accession
SAMN56614842
NCBI release date
2026-03-29
NCBI update date
2026-03-29
Raw reads accession
SRR37710653
Host
Host
Homo sapiens
Submission details
Submission ID
PZ173789.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-30 03:29:26 UTC
Date released
2026-03-30 03:37:05 UTC
Earliest release date
2026-03-29
Alignment and QC
Length
15049 (96.6%)
# of SNPs
226
# of inserted bases
2
# of unknown bases
346
Nucleotide mutations
Mutations called relative to the
PP109421.1
reference
Substitutions
C
90
T
C
183
T
A
565
G
G
587
T
C
589
T
T
922
C
A
940
C
T
1004
C
A
1009
G
A
1021
G
T
1028
C
G
1050
A
A
1051
C
G
1077
A
A
1092
G
T
1296
G
T
1359
C
A
1361
G
Show more
Deletions
N/A
Insertions
ins_3154:A, ins_15115:T
Amino acid substitutions
Substitutions called relative to the
PP109421.1
reference
Substitutions
F
F:
T
12
I
F:
A
23
T
F:
K
123
R
F:
I
567
V
G
G:
K
3
N
G:
P
71
L
G:
H
90
Y
G:
L
101
F
G:
T
113
I
G:
I
114
M
G:
S
124
L
G:
V
131
D
G:
I
134
K
G:
N
178
G
G:
G
224
E
G:
S
243
I
G:
K
262
E
G:
I
265
L
G:
E
271
G
G:
S
283
P
G:
D
284
G
G:
P
300
S
G:
V
303
A
G:
Y
304
H
L
L:
N
37
D
L:
P
171
L
L:
R
256
K
L:
Y
598
H
L:
M
824
V
L:
L
835
M
L:
L
1438
Q
L:
S
1593
G
L:
I
1716
M
L:
N
1723
S
L:
E
1725
G
L:
G
1731
D
L:
M
1757
I
M2-1
M2-1:
S
176
P
M2-2
M2-2:
Y
24
C
M2-2:
S
44
N
M2-2:
D
62
G
M2-2:
T
77
A
N
N:
K
84
R
N:
V
352
A
P
P:
L
55
P
P:
T
92
M
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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