PP_006QWJE.1

USA/PP_006QWJE.1/2026-02-16
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-16
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-03696

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-25 03:38insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.1.5

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-24
NCBI update date
2026-03-24
Raw reads accession

Host

Host

Submission details

Submission ID
PZ154614.1
Submitting group
Date submitted
2026-03-25 03:37:59 UTC
Date released
2026-03-25 03:45:42 UTC
Earliest release date
2026-03-24

Alignment and QC

Length
15047 (91.7%)
# of SNPs
236
# of inserted bases
4
# of deleted bases
4
# of unknown bases
1086

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • G198A
  • A321G
  • A351G
  • A496C
  • G551A
  • C589T
  • C622T
  • G664A
  • T697C
  • A748G
  • T1032C
  • T1048C
  • G1049A
  • G1050A
  • G1074A
  • A1092G
Deletions

3148, 4592, 7428, 7555
Insertions

ins_2297:A, ins_7586:A, ins_15115:TT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:V127I
  • F:K470R

G

  • G:K11T
  • G:A57T
  • G:P71L
  • G:H90Y
  • G:S100N
  • G:L101F
  • G:T130I
  • G:I134K
  • G:L142S
  • G:G224V
  • G:P234S
  • G:S243I
  • G:K262E
  • G:I265L
  • G:S275G
  • G:D284G
  • G:E286D
  • G:S294P

L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:S560T
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:T1795A

M

  • M:M43I

M2-1

  • M2-1:N174S
  • M2-1:S176P
  • M2-1:T180A
  • M2-1:T184M

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:I46T

N

  • N:V352A

P

  • P:L55P
Deletions
N/A
Insertions
N/A

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