PP_006QNJN.1

Australia/PP_006QNJN.1/2025-12-26
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2025-12-26
Sampling location
Australia (Northern Territory)
City
Darwin
GISAID Isolate ID
EPI_ISL_20384446

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.3

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Host

Host gender
Female

Submission details

Submission ID
hRSV/A/Australia/NT-RDH-0584/2025
Submitting group
Date submitted
2026-03-25 02:51:45 UTC
Date released
2026-03-25 02:53:22 UTC
Earliest release date
2026-03-25

Alignment and QC

Length
15226 (100%)
# of SNPs
240
# of inserted bases
6
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • A29G
  • A47G
  • T59C
  • T66A
  • A67G
  • C90T
  • C183T
  • C371T
  • C411T
  • G587T
  • T667C
  • A979C
  • A992G
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1078T
Deletions
4592
Insertions
ins_0:TTGC, ins_3154:A, ins_15115:T

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:I291V

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T112I
  • G:T113I
  • G:S117L
  • G:S128P
  • G:V131D
  • G:I134K
  • G:N178G
  • G:G224E
  • G:V225A
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:Y273H

L

  • L:T103I
  • L:P171L
  • L:R256K
  • L:A442V
  • L:Y598H
  • L:L835M
  • L:R1186I
  • L:I1237M
  • L:L1438Q
  • L:D1644E
  • L:I1656T
  • L:N1660I
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:N1737T
  • L:L1751I
  • L:N1986S

M2-1

  • M2-1:R4K
  • M2-1:S176P

M2-2

  • M2-2:N23S
  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:P101L

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

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