PP_006QLW0.1

Australia/PP_006QLW0.1/2025-11-27
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2025-11-27
Sampling location
Australia (South Australia)
City
Adelaide
GISAID Isolate ID
EPI_ISL_20381303

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.3

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Other: Swab

Host

Host gender
Female

Submission details

Submission ID
hRSV/A/Australia/SA-SAP-2533115337/2025
Submitting group
Date submitted
2026-03-25 02:51:45 UTC
Date released
2026-03-25 02:53:22 UTC
Earliest release date
2026-03-25

Alignment and QC

Length
15220 (99.9%)
# of SNPs
231
# of inserted bases
7
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T59C
  • T66A
  • A67G
  • C90T
  • C183T
  • C228T
  • C411T
  • C504T
  • A505G
  • T508C
  • G587T
  • C611A
  • A630G
  • T667C
  • T733C
  • A772T
  • T895C
  • G901A
Deletions
4592
Insertions
ins_0:TTGC, ins_3154:A, ins_15115:TT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:E2D
  • F:T12I
  • F:L15F

G

  • G:V69A
  • G:P71L
  • G:H90Y
  • G:L101I
  • G:T113I
  • G:V131D
  • G:I134K
  • G:R151H
  • G:N178G
  • G:G224E
  • G:V225A
  • G:K233E
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:G272I

L

  • L:P171L
  • L:R256K
  • L:I393V
  • L:S560L
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:D1644E
  • L:N1723S
  • L:N1724D
  • L:E1725G
  • L:G1731D
  • L:N1737T
  • L:D1985N

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:H100N
  • N:Y216H
  • N:V352A

NS2

  • NS2:H5N
  • NS2:Q11R

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

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