PP_006QLKN.1

Australia/PP_006QLKN.1/2025-06-28
Xiaomin Dong, Steven Edwards, Yi Mo Deng, Ian Barr, Arada Hirankitti & Clyde Dapat

WHO Collaborating Centre for Reference and Research on Influenza

Sample details

Collection date
2025-06-28
Sampling location
Australia (Victoria)
City
Melbourne
GISAID Isolate ID
EPI_ISL_20379025

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.1.9

INSDC

INSDC accession
BioProject accession
BioSample accession
GCA accession

Sampling

Sample type
Nasopharyngeal

Submission details

Submission ID
hRSV/A/Australia/VIC-RCH0054/2025
Submitting group
Date submitted
2026-03-25 02:51:45 UTC
Date released
2026-03-25 02:53:22 UTC
Earliest release date
2026-03-25

Alignment and QC

Length
15192 (99.8%)
# of SNPs
243
# of deleted bases
1

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T51A
  • T52C
  • T66A
  • A67G
  • C90T
  • T142C
  • C183T
  • G198A
  • T210C
  • T387C
  • A399G
  • A500T
  • C528A
  • G551A
  • G555A
  • T659C
  • G664A
  • T697C
Deletions
4592
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:S377N

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T118I
  • G:I134K
  • G:L142S
  • G:P222L
  • G:G224E
  • G:V225A
  • G:S243I
  • G:G254E
  • G:N255S
  • G:K262E
  • G:I265L
  • G:Y273H
  • G:D284G
  • G:Y304H
  • G:T320A

L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725R
  • L:K1726R
  • L:G1731D
  • L:S1789F
  • L:H1897N
  • L:Y2163N

M

  • M:M43I

M2-1

  • M2-1:S176P

M2-2

  • M2-2:I15V
  • M2-2:Y24C
  • M2-2:S44T

N

  • N:V352A

P

  • P:L55P
  • P:T92M

SH

  • SH:I38S
Deletions
N/A
Insertions
N/A

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