PP_006QCY4.1

Rwanda/PP_006QCY4.1/2024-10-25
R. Muvunyi, J. P. Musabyimana, N. Gahima, J. Rwabuhihi, E. Umumararungu, M. Gashegu, I. Mukagatare & C. M. Muvunyi

Rwanda Biomedical Centre, Director General

Sample details

Collection date
2024-10-25
Sampling location
Rwanda
Isolate name
CO26

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-19 03:33insdc_ingest_userOPEN
Data use terms URL

Clade

Clade
MARV.B.2

INSDC

INSDC accession
NCBI release date
2026-03-18
NCBI update date
2026-03-18

Host

Host

Submission details

Submission ID
PZ112888.1
Submitting group
Date submitted
2026-03-19 03:33:53 UTC
Date released
2026-03-19 03:34:46 UTC
Earliest release date
2026-03-18

Alignment and QC

Length
18306 (71.2%)
# of SNPs
751
# of ambiguous bases
4
# of unknown bases
4701

Nucleotide mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

  • G277T
  • G289A
  • G310A
  • G340A
  • C343T
  • T367C
  • T415C
  • G460A
  • T499C
  • G583A
  • G595A
  • G598A
  • C601T
  • T619C
  • C628T
  • C634T
  • C637T
  • C652T
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_001608.3 reference

Substitutions

GP

  • GP:T16I
  • GP:N18T
  • GP:N28D
  • GP:I113V
  • GP:A267T
  • GP:R276Q
  • GP:H279D
  • GP:S303G
  • GP:V319A
  • GP:S422N
  • GP:A425T
  • GP:V429I
  • GP:V547G
  • GP:K618R

L

  • L:I17V
  • L:A115T
  • L:S128P
  • L:V189I
  • L:I214V
  • L:Q282Y
  • L:H335C
  • L:Q342R
  • L:V359I
  • L:S398A
  • L:E536D
  • L:D653N
  • L:E947G
  • L:E1143K
  • L:S1161P
  • L:D1162E
  • L:K1164E
  • L:S1165L

NP

  • NP:M428V
  • NP:E448G
  • NP:G481S
  • NP:P493S
  • NP:R495G
  • NP:N501D
  • NP:N578S
  • NP:P579S
  • NP:M612A
  • NP:D625Y
  • NP:N654S
  • NP:I660V

VP24

  • VP24:N17K
  • VP24:H48R
  • VP24:V214I

VP30

  • VP30:V15A
  • VP30:T16I
  • VP30:T18S
  • VP30:H30N
  • VP30:Y34H
  • VP30:P90L
  • VP30:T121A
  • VP30:R123K
  • VP30:S159N
  • VP30:M201I

VP35

  • VP35:R70K
  • VP35:T94V
  • VP35:R285K

VP40

  • VP40:Q37H
  • VP40:V57I
  • VP40:Q159R
  • VP40:V195I
  • VP40:N269S
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue