PP_006QA03.1

USA/PP_006QA03.1/2026-02-09
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-09
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVB-03648

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-19 03:25insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
B.D.E.1

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-18
NCBI update date
2026-03-18
Raw reads accession

Host

Host

Submission details

Submission ID
PZ135882.1
Submitting group
Date submitted
2026-03-19 03:25:44 UTC
Date released
2026-03-19 03:33:23 UTC
Earliest release date
2026-03-18

Alignment and QC

Length
15140 (93.4%)
# of SNPs
138
# of inserted bases
4
# of deleted bases
2
# of unknown bases
920

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions

  • T48C
  • G62T
  • T144C
  • C212T
  • T357C
  • A386G
  • G434A
  • G513T
  • G579A
  • G944T
  • C998A
  • T1273C
  • G1385A
  • C1511T
  • T1541C
  • G1732A
  • T1846C
  • A2059T
Deletions

973, 4586
Insertions

ins_15092:ATAT

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:S211N
  • F:S389P

G

  • G:L71P
  • G:A74V
  • G:V94I
  • G:E97D
  • G:S100G
  • G:P214S
  • G:P221L
  • G:N228D
  • G:I252T
  • G:K256N
  • G:I268T
  • G:A269V
  • G:S275P
  • G:Y285H

L

  • L:Y34F
  • L:S173L
  • L:K570R
  • L:V715I
  • L:S1931N
  • L:T1987I
  • L:A2014S

M2-1

  • M2-1:K113R

M2-2

  • M2-2:I2T
  • M2-2:D35N
  • M2-2:C49F

N

  • N:V97I
  • N:Y149H

NS1

  • NS1:Y30H
  • NS1:M126I

NS2

  • NS2:D121Y

SH

  • SH:I49P
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue