PP_006Q5QT.1

USA/PP_006Q5QT.1/2026-02-09
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-09
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-03578

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-19 03:25insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-18
NCBI update date
2026-03-18
Raw reads accession

Host

Host

Submission details

Submission ID
PZ136002.1
Submitting group
Date submitted
2026-03-19 03:25:36 UTC
Date released
2026-03-19 03:33:11 UTC
Earliest release date
2026-03-18

Alignment and QC

Length
15046 (90.1%)
# of SNPs
225
# of inserted bases
1
# of deleted bases
2
# of unknown bases
1323

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • T106A
  • C183T
  • T372C
  • C379T
  • G587T
  • G1034A
  • G1050A
  • G1077A
  • A1082G
  • A1197T
  • T1359C
  • T1413A
  • T1422C
  • T1767C
  • C1788T
  • C1806T
  • C1860T
Deletions

4591, 4592
Insertions

ins_3150:G

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:E123K
  • G:V131D
  • G:I134K
  • G:N178G
  • G:T210A
  • G:G224E
  • G:T239I
  • G:S243I
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:P274L
  • G:D284G
  • G:P298L

L

  • L:L48V
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:I1871V

M2-1

  • M2-1:R45K
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:L13M

P

  • P:L55P
  • P:T92M
Deletions
N/A
Insertions
N/A

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