PP_006Q5CJ.1

USA/PP_006Q5CJ.1/2026-02-04
H. D. Kunerth, M. Plumb, D. Evans, L. Bohnker-Voels, K. Pung, B. Weber, J. Garfin, A. Mondelli, J. Jencks, M. Anacker & S. Namugenyi

Minnesota Department of Health, Public Health Laboratory - Infectious Disease Lab

Sample details

Collection date
2026-02-04
Sampling location
USA (Minnesota)
Isolate name
MN-MDH-RSVA-03566

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2026-03-19 03:25insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
A.D.3.3

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-03-18
NCBI update date
2026-03-18
Raw reads accession

Host

Host

Submission details

Submission ID
PZ135990.1
Submitting group
Date submitted
2026-03-19 03:25:36 UTC
Date released
2026-03-19 03:33:11 UTC
Earliest release date
2026-03-18

Alignment and QC

Length
15049 (94.8%)
# of SNPs
212
# of inserted bases
3
# of deleted bases
1
# of unknown bases
616

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions

  • C90T
  • C183T
  • A354G
  • G587T
  • C593T
  • G1034A
  • G1050T
  • G1074A
  • G1077A
  • T1088A
  • T1137C
  • T1218C
  • T1326C
  • T1359C
  • G1368A
  • T1413A
  • T1422C
  • A1599C
Deletions

4592
Insertions

ins_3154:A, ins_15115:TT

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:I14T

G

  • G:L23M
  • G:P71L
  • G:H90Y
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:D284G
  • G:E308K

L

  • L:P171L
  • L:K180R
  • L:R256K
  • L:T509A
  • L:Y598H
  • L:K801R
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-1

  • M2-1:E119D
  • M2-1:P120L
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

N

  • N:V352A

P

  • P:L55P
  • P:T92M
  • P:S215P
Deletions
N/A
Insertions
N/A

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