PP_006PL0V.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
DENV-2/Brazil/ITpS_WVz_0016S_001/2025-05-01
F. M. S. Estevez, Amanda, Cupertino, J. Dutra & R. S. Aguiar

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2025-05-01
Sampling location
Brazil (São Paulo)
City
Bauru

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-03-17 19:44moreirafrrRESTRICTED until 2027-03-17
Data use terms URL

Host

Host name - scientific
Aedes aegypti
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
331

Submission details

Submission ID
ITpS_WVz_0016S_001
Submitting group
Date submitted
2026-03-17 19:44:14 UTC
Date released
2026-03-17 19:54:26 UTC
Earliest release date
2026-03-17

Lineage & Serotype

Lineage
2II_F.1.1.2
Serotype
DENV-2

Alignment and QC

Length
10537 (75.7%)
# of SNPs
478
# of deleted bases
1
# of unknown bases
2418

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • G44A
  • A122G
  • C126T
  • G168A
  • A177G
  • G294A
  • G297A
  • T312C
  • T330C
  • T384C
  • T397A
  • C405T
  • G408A
  • C411T
  • C418A
  • T423C
  • T456C
  • C459T
Deletions

10283
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:S101T
  • C:M104I
  • C:L108M

E

  • E:M6I
  • E:R120T
  • E:V129I
  • E:T226I
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:T117A
  • NS1:S128L
  • NS1:Q131H
  • NS1:K174R
  • NS1:F178S
  • NS1:N222S
  • NS1:L247I
  • NS1:I264T
  • NS1:T265A
  • NS1:D281E

NS2A

  • NS2A:V5I

NS2B

  • NS2B:V59I
  • NS2B:K60R
  • NS2B:D63E

NS3

  • NS3:M13V
  • NS3:R186K
  • NS3:I333M
  • NS3:V395I
  • NS3:I461V

NS4B

  • NS4B:A19T
  • NS4B:T244A

NS5

  • NS5:I5T
  • NS5:S15N
  • NS5:M70L
  • NS5:R98K
  • NS5:I135T
  • NS5:I271V
  • NS5:K388E
  • NS5:S429C
  • NS5:R430G
  • NS5:K570R
  • NS5:G605V
  • NS5:I637A
  • NS5:Q644K
  • NS5:S676N
  • NS5:I687V

prM

  • prM:G7N
  • prM:K16R
  • prM:R19K
  • prM:S28E
  • prM:A29N
  • prM:I37M
  • prM:M49I
  • prM:K52N
  • prM:R55L
  • prM:I56L
  • prM:T57R
  • prM:E58Q
  • prM:T59N
  • prM:D62E
  • prM:V64I
  • prM:A70S
  • prM:E72S
  • prM:S81T
Deletions
N/A
Insertions
N/A

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