PP_006PKRD.1

DENV-2/Brazil/ITpS_BuY_0016H_001/2025-04-01
F. M. S. Estevez, Amanda, Cupertino, J. Dutra & R. S. Aguiar

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2025-04-01
Sampling location
Brazil (São Paulo)
City
Bauru

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage & Serotype

Lineage
2II_F.1.1.2
Serotype
DENV-2

Host

Host
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
1143

Submission details

Submission ID
ITpS_BuY_0016H_001
Submitting group
Date submitted
2026-03-17 19:44:14 UTC
Date released
2026-03-17 19:54:26 UTC
Earliest release date
2026-03-17

Alignment and QC

Length
10541 (84.6%)
# of SNPs
644
# of deleted bases
1
# of unknown bases
1473
# of frame shifts
1
Frame shifts
NS3:187-618(nt:5079-6375)

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions
  • G44A
  • C54T
  • A122G
  • C126T
  • G168A
  • A177G
  • G210A
  • T226C
  • A228G
  • G252A
  • A276G
  • G294A
  • G297A
  • T312C
  • A324G
  • T330C
  • T336C
  • T384C
Deletions
5078
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:S101T
  • C:M104I
  • C:L108M

E

  • E:M6I
  • E:Q52H
  • E:R120T
  • E:V129I
  • E:H149N
  • E:T226I
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:S80T
  • NS1:I88V
  • NS1:K174R
  • NS1:F178S
  • NS1:N222S
  • NS1:L247I
  • NS1:I264T
  • NS1:T265A
  • NS1:K272R
  • NS1:D281E

NS2A

  • NS2A:V5I
  • NS2A:M136I
  • NS2A:I171A

NS2B

  • NS2B:V59I
  • NS2B:K60R
  • NS2B:D63E

NS3

  • NS3:M13V
  • NS3:K15R
  • NS3:A120T
  • NS3:I140V
  • NS3:A160T
  • NS3:R184G

NS4A

  • NS4A:R76K
  • NS4A:I89V

NS4B

  • NS4B:L13F
  • NS4B:A19T
  • NS4B:V48I
  • NS4B:F112L
  • NS4B:V115I
  • NS4B:T244A

NS5

  • NS5:I5T
  • NS5:S15N
  • NS5:M70L
  • NS5:R98K
  • NS5:I135T
  • NS5:T176I
  • NS5:I271V
  • NS5:V335I
  • NS5:S429C
  • NS5:R430G
  • NS5:K570R
  • NS5:G605V
  • NS5:I637A
  • NS5:T638A
  • NS5:Q644K
  • NS5:S676N
  • NS5:K800T

prM

  • prM:G7N
  • prM:K16R
  • prM:R19K
  • prM:S28E
  • prM:A29N
  • prM:I37M
  • prM:M49I
  • prM:K52N
  • prM:R55L
  • prM:I56L
  • prM:T57R
  • prM:E58Q
  • prM:T59N
  • prM:D62E
  • prM:V64I
  • prM:A70S
  • prM:E72S
  • prM:V75I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue