PP_006PKE2.1

DENV-3/Brazil/ITpS_Hcy_0015U_001/2025-04-01
F. M. S. Estevez, Amanda, Cupertino, J. Dutra & R. S. Aguiar

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2025-04-01
Sampling location
Brazil (São Paulo)
City
Ribeirão Preto

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage & Serotype

Lineage
3III_B.3.2
Serotype
DENV-3

Host

Host
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
618

Submission details

Submission ID
ITpS_Hcy_0015U_001
Submitting group
Date submitted
2026-03-17 19:44:14 UTC
Date released
2026-03-17 19:54:26 UTC
Earliest release date
2026-03-17

Alignment and QC

Length
9783 (73.5%)
# of SNPs
349
# of unknown bases
1911

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions
  • C203T
  • T235C
  • T250C
  • C256T
  • A265G
  • C289T
  • T295C
  • G322T
  • C334T
  • C358T
  • C383A
  • A451G
  • C469G
  • T496G
  • C503T
  • T556C
  • G565A
  • C676T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001475.2 reference

Substitutions

2K

  • 2K:L17M
  • 2K:T20I

C

  • C:Q97K

E

  • E:V158I
  • E:A219T
  • E:E404A

NS1

  • NS1:A146T
  • NS1:L178M
  • NS1:T233S

NS2A

  • NS2A:L23M
  • NS2A:F38L
  • NS2A:V41M
  • NS2A:V127I
  • NS2A:V150I
  • NS2A:M186L

NS2B

  • NS2B:P57A

NS3

  • NS3:F31L
  • NS3:E43D
  • NS3:T112M
  • NS3:T176M
  • NS3:D392E

NS4A

  • NS4A:D36H
  • NS4A:V100I

NS4B

  • NS4B:I115V
  • NS4B:M151I
  • NS4B:S157P
  • NS4B:F160Y

NS5

  • NS5:V72I
  • NS5:V132A
  • NS5:A372V
  • NS5:E429D
  • NS5:I553T
  • NS5:Q562L
  • NS5:L603V
  • NS5:T629S

prM

  • prM:T5S
  • prM:G7D
  • prM:H11R
  • prM:S15G
  • prM:Q17N
  • prM:S28A
  • prM:A29S
  • prM:V31I
  • prM:L44M
  • prM:E46D
  • prM:M49V
  • prM:R55H
  • prM:T59V
  • prM:D62E
  • prM:V64I
  • prM:A70L
  • prM:E72S
  • prM:S81N
Deletions
N/A
Insertions
N/A

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