PP_006PK8E.1

DENV-1/Brazil/ITpS_3cX_0014k_001/2025-04-01
F. M. S. Estevez, Amanda, Cupertino, J. Dutra & R. S. Aguiar

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2025-04-01
Sampling location
Brazil (Rio Grande do Sul)
City
Porto Alegre

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage & Serotype

Lineage
1V_E.1
Serotype
DENV-1

Host

Host
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
778

Submission details

Submission ID
ITpS_3cX_0014k_001
Submitting group
Date submitted
2026-03-17 19:44:14 UTC
Date released
2026-03-17 19:54:26 UTC
Earliest release date
2026-03-17

Alignment and QC

Length
10178 (76.9%)
# of SNPs
668
# of deleted bases
1
# of unknown bases
1920
# of frame shifts
1
Frame shifts
E:199-495(nt:1529-2419)

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions
  • T171G
  • T241C
  • T244C
  • C253T
  • T274C
  • G302A
  • G349A
  • A355G
  • A363G
  • T397C
  • C439T
  • C443T
  • C451A
  • G466A
  • C481T
  • A499G
  • T505C
  • A523G
Deletions
1528
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001477.1 reference

Substitutions

C

  • C:V26G
  • C:G70S
  • C:N90S

E

  • E:D37N

NS1

  • NS1:V93A
  • NS1:S94N
  • NS1:V128I
  • NS1:N139D
  • NS1:N146G
  • NS1:I162V
  • NS1:V178M
  • NS1:I224T
  • NS1:K227R
  • NS1:Y247F
  • NS1:T307I
  • NS1:K324R
  • NS1:K347R

NS2A

  • NS2A:K67R
  • NS2A:R82K
  • NS2A:V106I
  • NS2A:D139E
  • NS2A:S142P
  • NS2A:A147T
  • NS2A:F159L
  • NS2A:H162D
  • NS2A:M168T
  • NS2A:I171V

NS2B

  • NS2B:V11I
  • NS2B:E63Q
  • NS2B:I106V

NS3

  • NS3:E43D
  • NS3:A91T
  • NS3:A112T
  • NS3:R185K
  • NS3:V221I
  • NS3:K255R

NS4A

  • NS4A:Q19L

NS4B

  • NS4B:H17Y
  • NS4B:H24Q
  • NS4B:A27T
  • NS4B:I48V

NS5

  • NS5:I34M
  • NS5:Y127H
  • NS5:T135M
  • NS5:Q195R
  • NS5:K311R
  • NS5:K364R
  • NS5:A370T
  • NS5:R378K
  • NS5:A616V
  • NS5:S629L
  • NS5:V642A
  • NS5:K647E
  • NS5:H649Y
  • NS5:V784I
  • NS5:T789A
  • NS5:D834E
  • NS5:F881Y

prM

  • prM:T59A
  • prM:E72D
  • prM:K122R
Deletions
N/A
Insertions
N/A

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