PP_006PGZ0.1

DENV-3/Brazil/ITpS_4np_0015P_001/2025-01-01
F. M. S. Estevez, Amanda, Cupertino, J. Dutra & R. S. Aguiar

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2025-01-01
Sampling location
Brazil (São Paulo)
City
Bauru

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage & Serotype

Lineage
3III_B.3.2
Serotype
DENV-3

Host

Host
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown

Sequencing

Sequencing instrument
Illumina NextSeq
Depth of coverage
970

Submission details

Submission ID
ITpS_4np_0015P_001
Submitting group
Date submitted
2026-03-17 19:44:14 UTC
Date released
2026-03-17 19:54:26 UTC
Earliest release date
2026-03-17

Alignment and QC

Length
10008 (87.4%)
# of SNPs
427
# of unknown bases
654

Nucleotide mutations

Mutations called relative to the NC_001475.2 reference

Substitutions
  • C203T
  • T235C
  • T250C
  • C256T
  • A265G
  • C289T
  • T295C
  • G322T
  • C334T
  • C358T
  • C383A
  • A451G
  • C469G
  • T496G
  • T556C
  • G565A
  • C676T
  • T679C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001475.2 reference

Substitutions

2K

  • 2K:L17M
  • 2K:T20I

C

  • C:Q97K

E

  • E:Y132H
  • E:V158I
  • E:A219T
  • E:I380T
  • E:E404A

NS1

  • NS1:I71V
  • NS1:L94I
  • NS1:L178M
  • NS1:T233S
  • NS1:S290N

NS2A

  • NS2A:L23M
  • NS2A:F38L
  • NS2A:V41M
  • NS2A:V127I
  • NS2A:V150I
  • NS2A:M186L

NS2B

  • NS2B:V33A
  • NS2B:P57A

NS3

  • NS3:F31L
  • NS3:E43D
  • NS3:N68S
  • NS3:T112M
  • NS3:T176M
  • NS3:R338K
  • NS3:D392E

NS4A

  • NS4A:D36H
  • NS4A:V100I

NS4B

  • NS4B:I115V
  • NS4B:M151I
  • NS4B:S157P
  • NS4B:F160Y

NS5

  • NS5:V72I
  • NS5:I78V
  • NS5:T188A
  • NS5:V234I
  • NS5:A372V
  • NS5:E429D
  • NS5:I553T
  • NS5:Q562L
  • NS5:T585A
  • NS5:L603V
  • NS5:T629S
  • NS5:L639P
  • NS5:S763N
  • NS5:E820D
  • NS5:V830I

prM

  • prM:T5S
  • prM:G7D
  • prM:H11R
  • prM:S15G
  • prM:Q17N
  • prM:S28A
  • prM:A29S
  • prM:V31I
  • prM:L44M
  • prM:E46D
  • prM:M49V
  • prM:R55H
  • prM:T59V
  • prM:D62E
  • prM:V64I
  • prM:A70L
  • prM:E72S
  • prM:S81N
Deletions
N/A
Insertions
N/A

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