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PP_006PEH0.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
DENV-2/Brazil/ITpS_cue_0013q_001/2024-06-02
H. J. Alves,
F. M. S. Estevez &
R. S. de Aguiar
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2024-06-02
Sampling location
Brazil (São Paulo)
City
São Paulo
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Lineage & Serotype
Lineage
2II_F.1.1.2
Serotype
DENV-2
Host
Host
yellow fever mosquito (Aedes aegypti)
Host gender
Female
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown
Sequencing
Sequencing instrument
Illumina MiSeq
Submission details
Submission ID
ITpS_cue_0013q_001
Submitting group
DengSeq
Date submitted
2026-03-17 19:44:14 UTC
Date released
2026-03-17 19:54:26 UTC
Earliest release date
2026-03-17
Alignment and QC
Length
10425 (83.8%)
# of SNPs
644
# of deleted bases
118
# of unknown bases
1555
# of frame shifts
1
Frame shifts
NS3:534-618(nt:6119-6375)
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
G
44
A
C
54
T
A
122
G
C
126
T
G
168
A
A
177
G
G
210
A
T
226
C
A
228
G
G
252
A
A
276
G
G
294
A
G
297
A
T
312
C
A
324
G
T
330
C
T
336
C
T
384
C
Show more
Deletions
4435-4464, 6031-6118
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
S
101
T
C:
M
104
I
C:
L
108
M
E
E:
M
6
I
E:
Q
52
H
E:
E
71
A
E:
R
120
T
E:
V
129
I
E:
H
149
N
E:
T
226
I
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
S
80
T
NS1:
I
88
V
NS1:
T
117
A
NS1:
S
128
L
NS1:
Q
131
H
NS1:
K
174
R
NS1:
F
178
S
NS1:
N
222
S
NS1:
L
247
I
NS1:
I
264
T
NS1:
T
265
A
NS1:
K
272
R
NS1:
D
281
E
NS2A
NS2A:
V
5
I
NS2B
NS2B:
V
59
I
NS2B:
K
60
R
NS2B:
D
63
E
NS3
NS3:
M
13
V
NS3:
K
15
R
NS3:
A
120
T
NS3:
I
140
V
NS3:
A
160
T
NS3:
R
186
K
NS3:
V
395
I
NS3:
I
461
V
NS4A
NS4A:
R
76
K
NS4A:
I
89
V
NS4B
NS4B:
L
13
F
NS4B:
A
19
T
NS4B:
V
48
I
NS4B:
F
112
L
NS4B:
V
115
I
NS4B:
T
244
A
NS5
NS5:
I
5
T
NS5:
S
15
N
NS5:
M
70
L
NS5:
R
98
K
NS5:
I
135
T
NS5:
T
176
I
NS5:
I
271
V
NS5:
V
335
I
NS5:
S
429
C
NS5:
R
430
G
NS5:
K
570
R
NS5:
G
605
V
NS5:
K
800
T
NS5:
A
865
T
prM
prM:
G
7
N
prM:
K
16
R
prM:
R
19
K
prM:
S
28
E
prM:
A
29
N
prM:
I
37
M
prM:
M
49
I
prM:
K
52
N
prM:
R
55
L
prM:
I
56
L
prM:
T
57
R
prM:
E
58
Q
prM:
T
59
N
prM:
D
62
E
prM:
V
64
I
prM:
A
70
S
prM:
E
72
S
prM:
S
81
T
Show more
Deletions
NS2B
NS2B:102-111
NS3
NS3:504-533
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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