PP_006N1VR.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
DENV-2/Brazil/ITpS_eLb_000yP_001/2025-06-08
A. F. Mendonca, C. F. D. Andrade, R. M. D. Almeida, V. L. D. Silva & L. A. Pereira

Laboratório Estadual de Saúde Pública Dr. Giovanni Cysneiros

Sample details

Collection date
2025-06-08
Sampling location
Brazil (Goiás)
City
Goiânia

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-03-17 19:14moreirafrrRESTRICTED until 2027-03-17
Data use terms URL

Host

Host name - scientific
Homo sapiens
Host age
21
Host gender
Female
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown

Sequencing

Sequencing instrument
Illumina MiSeq
Depth of coverage
2403

Submission details

Submission ID
ITpS_eLb_000yP_001
Submitting group
Date submitted
2026-03-17 19:13:58 UTC
Date released
2026-03-17 19:17:12 UTC
Earliest release date
2026-03-17

Lineage & Serotype

Lineage
2II_F.1.1.5
Serotype
DENV-2

Alignment and QC

Length
10137 (94.5%)
# of SNPs
805

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions

  • A122G
  • C126T
  • G168A
  • A177G
  • G210A
  • A228G
  • G252A
  • C265T
  • A276G
  • G294A
  • G297A
  • T312C
  • A324G
  • T330C
  • T336C
  • G372C
  • T397A
  • C405T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:S101T
  • C:M104I
  • C:L108M

E

  • E:M6I
  • E:I23V
  • E:Q52H
  • E:K58R
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:I164V
  • E:I322V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:S80T
  • NS1:T117A
  • NS1:S128L
  • NS1:Q131H
  • NS1:K174R
  • NS1:F178S
  • NS1:N222S
  • NS1:L247F
  • NS1:I264T
  • NS1:T265A
  • NS1:K272R
  • NS1:D281E

NS2A

  • NS2A:V5I
  • NS2A:K135R
  • NS2A:M136I
  • NS2A:I171A

NS2B

  • NS2B:L21F
  • NS2B:V59I
  • NS2B:K60R
  • NS2B:D63E

NS3

  • NS3:M13V
  • NS3:K15R
  • NS3:A120T
  • NS3:T122I
  • NS3:I140V
  • NS3:A160T
  • NS3:R186K
  • NS3:V273I
  • NS3:I333M
  • NS3:V395I
  • NS3:I461V

NS4A

  • NS4A:D23N
  • NS4A:R76K
  • NS4A:I89V

NS4B

  • NS4B:L13F
  • NS4B:A19T
  • NS4B:V48I
  • NS4B:V91A
  • NS4B:F112L
  • NS4B:T244A

NS5

  • NS5:I5T
  • NS5:S15N
  • NS5:M70L
  • NS5:T72A
  • NS5:R98K
  • NS5:I135T
  • NS5:T176I
  • NS5:Y247H
  • NS5:I271T
  • NS5:V335I
  • NS5:R430G
  • NS5:K570R
  • NS5:G605V
  • NS5:I637A
  • NS5:Q644K
  • NS5:A648V
  • NS5:S676N
  • NS5:I687V
  • NS5:K800T
  • NS5:A865T

prM

  • prM:G7N
  • prM:K16R
  • prM:R19K
  • prM:S28E
  • prM:A29N
  • prM:I37M
  • prM:M49I
  • prM:K52N
  • prM:R55L
  • prM:I56L
  • prM:T57R
  • prM:E58Q
  • prM:T59N
  • prM:D62E
  • prM:V64I
  • prM:A70S
  • prM:E72S
  • prM:S81T
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue