PP_006N1Q1.1

Restricted-Use sequence

This sequence is only available under the Restricted Use Terms. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
DENV-1/Brazil/ITpS_HWu_000yK_001/2025-05-04
A. F. Mendonca, C. F. D. Andrade, R. M. D. Almeida, V. L. D. Silva & L. A. Pereira

Laboratório Estadual de Saúde Pública Dr. Giovanni Cysneiros

Sample details

Collection date
2025-05-04
Sampling location
Brazil (Goiás)
City
Inhumas

Data use terms

Data use terms
RESTRICTED

Data use terms history

ChangedUserData use terms
2026-03-17 19:14moreirafrrRESTRICTED until 2027-03-17
Data use terms URL

Host

Host name - scientific
Homo sapiens
Host age
47
Host gender
Female
Host disease
unknown
Signs and symptoms
unknown
Host health state
unknown
Host health outcome
unknown
Travel history
unknown

Sequencing

Sequencing instrument
Illumina MiSeq
Depth of coverage
4883

Submission details

Submission ID
ITpS_HWu_000yK_001
Submitting group
Date submitted
2026-03-17 19:13:58 UTC
Date released
2026-03-17 19:17:12 UTC
Earliest release date
2026-03-17

Lineage & Serotype

Lineage
1V_E.1
Serotype
DENV-1

Alignment and QC

Length
10335 (96.3%)
# of SNPs
864

Nucleotide mutations

Mutations called relative to the NC_001477.1 reference

Substitutions

  • T171G
  • T241C
  • T244C
  • C253T
  • T274C
  • G302A
  • G349A
  • A355G
  • A363G
  • T397C
  • C439T
  • C443T
  • C451A
  • G466A
  • C481T
  • A499G
  • T505C
  • A523G
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001477.1 reference

Substitutions

C

  • C:V26G
  • C:G70S
  • C:N90S

E

  • E:D37N
  • E:T88A
  • E:I114L
  • E:T161I
  • E:K203E
  • E:I293T
  • E:S339T
  • E:A369T
  • E:K394R
  • E:I436V
  • E:I439V
  • E:I480V

NS1

  • NS1:V93A
  • NS1:S94N
  • NS1:V128I
  • NS1:N139D
  • NS1:N146G
  • NS1:I162V
  • NS1:V178M
  • NS1:I224T
  • NS1:K227R
  • NS1:Y247F
  • NS1:T307I
  • NS1:K324R
  • NS1:K347R

NS2A

  • NS2A:L12I
  • NS2A:I15V
  • NS2A:R24K
  • NS2A:S28N
  • NS2A:T44I
  • NS2A:K67R
  • NS2A:R82K
  • NS2A:V106I
  • NS2A:D139E
  • NS2A:S142P
  • NS2A:A147T
  • NS2A:F159L
  • NS2A:H162D
  • NS2A:M168T
  • NS2A:I171V
  • NS2A:L199F

NS2B

  • NS2B:V11I
  • NS2B:E63Q
  • NS2B:I106V

NS3

  • NS3:E43D
  • NS3:A91T
  • NS3:A112T
  • NS3:R185K
  • NS3:V221I
  • NS3:K255R
  • NS3:V384I
  • NS3:I474V

NS4A

  • NS4A:Q19L
  • NS4A:K39R
  • NS4A:R76K
  • NS4A:I89T

NS4B

  • NS4B:H17Y
  • NS4B:A18T
  • NS4B:H24Q
  • NS4B:A27T
  • NS4B:I48V

NS5

  • NS5:I34T
  • NS5:Y127H
  • NS5:T135M
  • NS5:Q195R
  • NS5:K311R
  • NS5:K364R
  • NS5:A370T
  • NS5:R378K
  • NS5:D432G
  • NS5:A616V
  • NS5:S629L
  • NS5:V642A
  • NS5:K647R
  • NS5:H649Y
  • NS5:T651A
  • NS5:V784I
  • NS5:T789A
  • NS5:D834E
  • NS5:F881Y

prM

  • prM:T59A
  • prM:E72D
  • prM:D89E
  • prM:K122R
Deletions
N/A
Insertions
N/A

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