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PP_006HTTD.1
Download
Download FASTA
Download metadata TSV
DENV-4/USA/PP_006HTTD.1/2025-07-17
M. Mitchell,
Y. Dong,
O. Tekin &
Y. Huang
FLDOH, BPHL
Sample details
Collection date
2025-07-17
Sampling location
USA (FL)
Isolate name
DENV-4/USA/FL-BPHL-0020/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 09:55
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
PX395916.1
BioProject accession
PRJNA973096
BioSample accession
SAMN51637546
NCBI release date
2025-09-24
NCBI update date
2025-09-24
Raw reads accession
SRR35515448
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
PX395916.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 09:53:22 UTC
Date released
2026-03-12 10:35:01 UTC
Earliest release date
2025-09-24
Lineage & Serotype
Lineage
4II_B.1.3
Serotype
DENV-4
Alignment and QC
Length
10501 (98.6%)
# of SNPs
356
Nucleotide mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
C
203
A
G
352
A
G
359
A
C
414
T
C
428
T
T
444
C
C
445
A
C
447
T
C
449
G
A
450
T
G
451
C
C
452
A
G
496
A
G
502
A
T
584
C
C
606
T
G
698
C
T
800
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_002640.1
reference
Substitutions
C
C:
R
84
K
E
E:
S
64
L
E:
M
163
T
E:
K
174
E
E:
A
222
T
E:
I
351
V
E:
S
354
A
NS1
NS1:
A
6
V
NS1:
K
11
R
NS1:
V
22
A
NS1:
T
105
I
NS1:
V
108
A
NS1:
L
153
F
NS1:
K
214
R
NS1:
S
239
T
NS1:
V
265
M
NS1:
D
290
N
NS2A
NS2A:
Q
2
P
NS2A:
V
35
A
NS2A:
V
112
T
NS2A:
S
114
T
NS2A:
V
144
L
NS2A:
M
158
I
NS2A:
P
159
S
NS2B
NS2B:
V
74
I
NS3
NS3:
K
14
Q
NS3:
P
435
T
NS3:
A
466
T
NS3:
E
558
K
NS3:
R
594
K
NS4B
NS4B:
V
18
A
NS4B:
M
84
V
NS5
NS5:
D
47
E
NS5:
K
175
N
NS5:
H
247
Y
NS5:
Y
252
H
NS5:
K
649
R
NS5:
I
692
V
NS5:
T
786
I
NS5:
T
791
I
NS5:
T
826
I
NS5:
H
832
Q
NS5:
S
856
A
prM
prM:
T
4
S
prM:
G
7
D
prM:
H
11
L
prM:
S
15
A
prM:
Q
17
H
prM:
R
19
K
prM:
S
22
P
prM:
S
28
T
prM:
A
29
E
prM:
V
31
I
prM:
M
33
K
prM:
L
44
M
prM:
M
49
V
prM:
R
55
L
prM:
I
56
L
prM:
T
57
V
prM:
E
58
N
prM:
D
62
E
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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