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PP_006HGPY.1
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Download FASTA
Download metadata TSV
DENV-1/USA/PP_006HGPY.1/2025-04-05
E. B. Fox,
J. M. Garrigues &
N. M. Green
Los Angeles County Public Health Lab microbial pathogen submission group, Los Angeles County Public Health Laboratories
Sample details
Collection date
2025-04-05
Sampling location
USA (California)
Isolate name
hDenV1/USA/CA-LACPHL-DA00066/2025
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 09:55
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession
PV833223.1
NCBI release date
2025-06-30
NCBI update date
2025-06-30
Host
Host
9606
Host name - scientific
Homo sapiens
Submission details
Submission ID
PV833223.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 09:53:22 UTC
Date released
2026-03-12 10:34:00 UTC
Earliest release date
2025-06-30
Lineage & Serotype
Lineage
1I_K.2
Serotype
DENV-1
Alignment and QC
Length
10658 (99.2%)
# of SNPs
789
# of ambiguous bases
13
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
65
G
G
109
A
G
120
C
T
208
C
T
230
C
T
244
C
T
274
C
T
335
C
G
340
A
A
363
G
C
382
T
G
385
A
C
412
T
C
419
A
C
424
T
C
431
T
G
436
A
C
443
T
Show more
Deletions
N/A
Insertions
N/A
Amino acid mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
C
C:
G
9
A
C:
N
90
S
C:
L
109
M
E
E:
N
8
S
E:
T
88
A
E:
T
155
S
E:
S
171
T
E:
K
203
E
E:
I
293
T
E:
V
324
I
E:
S
339
T
E:
V
380
I
E:
I
436
V
E:
I
461
V
E:
M
484
L
NS1
NS1:
S
94
A
NS1:
N
146
D
NS1:
E
208
D
NS1:
T
307
I
NS1:
K
324
R
NS2A
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
S
65
T
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
M
133
I
NS2A:
L
149
F
NS2A:
V
155
I
NS2A:
T
158
M
NS2A:
I
171
V
NS2A:
T
210
A
NS2B
NS2B:
M
112
L
NS3
NS3:
L
26
M
NS3:
G
44
N
NS3:
F
85
L
NS3:
A
91
T
NS3:
V
221
I
NS3:
A
293
S
NS3:
D
350
E
NS3:
V
384
I
NS3:
Q
466
H
NS4A
NS4A:
K
39
R
NS4A:
T
69
M
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
20
V
NS4B:
A
27
T
NS5
NS5:
I
34
M
NS5:
Y
127
H
NS5:
T
135
I
NS5:
T
192
I
NS5:
K
248
R
NS5:
N
285
H
NS5:
R
325
K
NS5:
V
413
I
NS5:
T
565
K
NS5:
S
566
A
NS5:
E
634
D
NS5:
K
647
E
NS5:
H
649
Y
NS5:
T
651
V
NS5:
V
829
I
NS5:
F
881
Y
prM
prM:
T
59
A
prM:
E
72
D
prM:
K
122
R
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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