PP_006FMZC.1

DENV-2/Colombia/PP_006FMZC.1/2024-07-04
E. Murillo, S. Zuluaga, A. Barrientos, J. Gonzalez, M. Quimbayo & R. Rojo

UNIVERSIDAD DE ANTIOQUIA, Lime

Sample details

Collection date
2024-07-04
Sampling location
Colombia (Medellin)
Isolate name
DENV2/Cosmopolitan/Med/Col/0240720LIME/2024

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage & Serotype

Lineage
2II_F.1.1.2
Serotype
DENV-2

INSDC

INSDC accession
NCBI release date
2024-10-08
NCBI update date
2024-10-08

Host

Host

Submission details

Submission ID
PQ422931.1
Submitting group
Date submitted
2026-03-12 09:53:22 UTC
Date released
2026-03-12 10:31:57 UTC
Earliest release date
2024-10-08

Alignment and QC

Length
1516 (23.9%)
# of SNPs
104
# of deleted bases
1048

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions
  • C945T
  • G954A
  • G978A
  • T1009C
  • A1011G
  • C1047T
  • A1050G
  • C1086G
  • G1092C
  • T1095C
  • C1101T
  • C1113T
  • T1116C
  • A1131G
  • A1148C
  • G1170A
  • G1191A
  • G1203A
Deletions
2440-3487
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001474.2 reference

Substitutions

E

  • E:M6I
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:H149N
  • E:T226I
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:C4V
  • NS1:V5A

prM

  • prM:A166T
Deletions
N/A
Insertions
N/A

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