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PP_005N2VR.1
Download
Download FASTA
Download metadata TSV
YFV/Senegal/PP_005N2VR.1/2022
J. Zhang,
E. Chavez,
A. E. Lin,
D. Wang,
M. Winkler,
T. Tamura,
S. Carver,
A. Biswas,
B. Adamson,
R. Kleiner,
B. Burwitz,
N. Crossland,
F. Douam &
A. Ploss
Princeton University, Department of Molecular Biology
Sample details
Collection date
2022
Sampling location
Senegal
Isolate name
Dakar Ben Burwitz
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2026-03-12 09:45
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Clade
Clade
Clade V
INSDC
INSDC accession
PQ186347.1
NCBI release date
2025-08-01
NCBI update date
2025-08-01
Host
Host
9544
Host name - scientific
Macaca mulatta
Submission details
Submission ID
PQ186347.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-03-12 09:45:09 UTC
Date released
2026-03-12 10:15:09 UTC
Earliest release date
2025-08-01
Alignment and QC
Length
10867 (100%)
# of SNPs
396
# of inserted bases
5
Nucleotide mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
T
178
C
C
262
T
T
271
C
T
284
C
A
304
G
A
367
G
C
370
T
T
455
C
G
466
A
A
473
G
A
574
T
T
583
C
A
597
T
C
610
T
C
631
T
T
640
C
T
709
C
T
854
C
Show more
Deletions
N/A
Insertions
ins_10862:ACGTA
Amino acid mutations
Mutations called relative to the
NC_002031.1
reference
Substitutions
2K
2K:
S
1
T
2K:
A
20
V
E
E:
R
52
G
E:
V
56
A
E:
I
135
V
E:
V
170
A
E:
I
173
T
E:
T
200
K
E:
I
299
M
E:
F
305
S
E:
S
325
P
E:
R
331
K
E:
R
380
T
E:
V
407
A
E:
T
416
A
E:
N
450
S
M
M:
F
36
L
M:
A
43
S
NS1
NS1:
F
79
L
NS1:
K
276
R
NS1:
V
307
I
NS2a
NS2a:
L
106
M
NS2a:
V
118
M
NS2a:
A
167
T
NS2a:
F
169
L
NS2a:
A
172
T
NS2a:
F
183
S
NS2a:
I
220
L
NS2b
NS2b:
L
37
I
NS2b:
L
53
I
NS2b:
L
109
I
NS2b:
R
126
K
NS3
NS3:
V
195
I
NS3:
V
280
I
NS3:
N
485
D
NS3:
S
613
A
NS3:
E
614
D
NS4a
NS4a:
V
107
I
NS4b
NS4b:
I
20
T
NS4b:
M
95
I
NS4b:
M
117
T
NS4b:
E
145
K
NS4b:
C
187
Y
NS4b:
H
232
Y
RdRPol
RdRPol:
S
2
R
RdRPol:
R
22
Q
RdRPol:
I
78
T
RdRPol:
V
155
A
RdRPol:
V
162
M
RdRPol:
K
275
R
RdRPol:
S
292
T
RdRPol:
V
643
T
RdRPol:
T
789
P
RdRPol:
E
815
G
RdRPol:
M
833
V
RdRPol:
K
836
E
RdRPol:
L
901
P
prM
prM:
Y
39
F
prM:
F
125
L
prM:
A
132
S
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Aligned nucleotide sequence
Aligned amino acid sequences
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