PP_0052FNZ.1

Argentina/PP_0052FNZ.1/2025-06-13
V. Nadalich, D. Acuna, M. Nabaes Jodar, R. Toro, A. Angeletti, A. Cordero, C. Ghiglione, E. De la Rubia, G. Ayala, E. Cobas, L. Delaplace & M. Viegas

National University of La Plata, Buenos Aires, Argentina

Sample details

Collection date
2025-06-13
Sampling location
Argentina

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.2

Host

Host

Sequencing

Sequencing instrument
MinION
Sequencing protocol
Rapid Barcoding Kit; Oxford Nanopore

Submission details

Submission ID
HRSV/A/Argentina/PAIS-GONNET/28/2025-06-13
Submitting group
Date submitted
2026-03-09 13:38:06 UTC
Date released
2026-03-09 13:38:34 UTC
Earliest release date
2026-03-09

Alignment and QC

Length
15225 (100%)
# of SNPs
219

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • C156T
  • C183T
  • A280G
  • A577G
  • G587T
  • G590A
  • C604T
  • A682G
  • G766A
  • T862C
  • A981G
  • C1012T
  • G1034A
  • G1050A
  • G1077A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:S276N
  • F:N388T

G

  • G:P71L
  • G:H90Y
  • G:L97S
  • G:G98A
  • G:L101S
  • G:T113I
  • G:V131D
  • G:I134K
  • G:Q152P
  • G:N178G
  • G:G224E
  • G:P230T
  • G:S243T
  • G:H258Q
  • G:K262E
  • G:I265L
  • G:H266L
  • G:S277P

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:G1550S
  • L:I1653V
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:I71V

P

  • P:L55P
  • P:S60P
  • P:T92I
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue