PP_0052FJ7.1

Argentina/PP_0052FJ7.1/2025-06-19
V. Nadalich, D. Acuna, M. Nabaes Jodar, R. Toro, A. Angeletti, A. Cordero, C. Ghiglione, E. De la Rubia, G. Ayala, E. Cobas, L. Delaplace & M. Viegas

National University of La Plata, Buenos Aires, Argentina

Sample details

Collection date
2025-06-19
Sampling location
Argentina

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.1.5

Host

Host

Sequencing

Sequencing instrument
MinION
Sequencing protocol
Rapid Barcoding Kit; Oxford Nanopore

Submission details

Submission ID
HRSV/A/Argentina/PAIS-GONNET/23/2025-06-19
Submitting group
Date submitted
2026-03-09 13:38:06 UTC
Date released
2026-03-09 13:38:34 UTC
Earliest release date
2026-03-09

Alignment and QC

Length
15225 (100%)
# of SNPs
237

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • A321G
  • A351G
  • A496C
  • G551A
  • C589T
  • C622T
  • G664A
  • T697C
  • A748G
  • T928C
  • G1000A
  • C1012T
  • T1019C
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:V127I
  • F:K470R

G

  • G:A57T
  • G:P71L
  • G:H90Y
  • G:S100N
  • G:L101F
  • G:I134K
  • G:L142S
  • G:G224V
  • G:P234S
  • G:S243I
  • G:K262E
  • G:I265L
  • G:S275G
  • G:D284G
  • G:E286D
  • G:S294P
  • G:Y304H
  • G:T319I
  • G:T320A

L

  • L:N143D
  • L:P171L
  • L:T179S
  • L:R256K
  • L:S560T
  • L:Y598H
  • L:M1225I
  • L:L1438Q
  • L:I1653V
  • L:K1661N
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:T1795A

M

  • M:M43I

M2-1

  • M2-1:N174S
  • M2-1:S176P
  • M2-1:T180A

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

P

  • P:L55P
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue